| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yhhW [C]
Identifier: 115351084
GI number: 115351084
Start: 1118920
End: 1119786
Strand: Direct
Name: yhhW [C]
Synonym: Bamb_1030
Alternate gene names: 115351084
Gene position: 1118920-1119786 (Clockwise)
Preceding gene: 115351081
Following gene: 115351085
Centisome position: 31.46
GC content: 68.63
Gene sequence:
>867_bases ATGAAGAAGATCCAGGGTGTTTACAGCGCGCCGCGTGGCCATTGGGTCGGCGACGGTTTCCCGGTGCGTTCGATGTTCAG CTATCAGTCTCACGGGGCGCACCTCAGCCCGTTCCTGCTGCTCGACTACGCGGGCCCCGCGAACTTCGAGCCGGCTTCGG CACCGCGCGGGGTGGGGCAGCACCCGCACCGCGGGTTCGAAACCGTGACGATCGTCTATGACGGCGAAGTCGCTCACCGC GACTCGACCGGCGCGGGCGGCGTGATCGGCCCGGGCGACGTGCAGTGGATGACGGCCGCGAGCGGGATCCTCCACGAGGA ATTCCACTCGGAGGCCTTCACGAAGCGCGGCGGTCCGCTCGAGATGGTGCAGCTGTGGGTGAACCTGCCCGCCGCCGACA AGATGGGCACGCCCGGCTACCAGACGCTGCTGAACGCGGACATCCCGGTGGTCGAGCTGCCGGACGGTGCGGGGCGTGCG CGGATCATCGCGGGCGAATTCGACGGACGGCGCGGCCCGGCCCGCACGCACACGCCGATCGACGTGTGGGACGTGCGGCT CGCAGCCGGCGGCCGCGCGCGGTTCCCGATCGCCGAAGGGCGGACGCTCGCGGTGGTGGTGCTGAACGGTACGCTGCTGG TGAACGGCGAGACGGTCGCCCGCGAAGCGCAGTTCGTGCAACTGAGCCGCGACGGCCGCGACGTCGAGATCGAAGCGAAC GGCGACGCCAAGCTGTTGATTTTGAGCGGCGAGCCGATCGATGAGCCGGTCGTCGGCTACGGGCCGTTCGTGATGAACTC GCAAGAGGAAATCCGGACCGCGATCGACGATTTCAACAACGGCCGCTTCGGCCAGATGCCGGCATGA
Upstream 100 bases:
>100_bases GCTGAGTGCGATTTTCGCAGTCTACCGGATCGATCGTTCCATCTCTATATTCGTACCCAGGATGCGAAGCACGTGTTTCG CCGCAATTCGGAGAAGGCAA
Downstream 100 bases:
>100_bases CGGACAGGCCCCGCGCAATTGCGGGGCCTTTTTTCGTGCGCGGAAGGGTGCGTGCGTGCTGCGTGCGCTTCGAGGCATAA TCGACGGTTGCCGCGCGCCG
Product: pirin domain-containing protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein PA2418 [H]
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MKKIQGVYSAPRGHWVGDGFPVRSMFSYQSHGAHLSPFLLLDYAGPANFEPASAPRGVGQHPHRGFETVTIVYDGEVAHR DSTGAGGVIGPGDVQWMTAASGILHEEFHSEAFTKRGGPLEMVQLWVNLPAADKMGTPGYQTLLNADIPVVELPDGAGRA RIIAGEFDGRRGPARTHTPIDVWDVRLAAGGRARFPIAEGRTLAVVVLNGTLLVNGETVAREAQFVQLSRDGRDVEIEAN GDAKLLILSGEPIDEPVVGYGPFVMNSQEEIRTAIDDFNNGRFGQMPA
Sequences:
>Translated_288_residues MKKIQGVYSAPRGHWVGDGFPVRSMFSYQSHGAHLSPFLLLDYAGPANFEPASAPRGVGQHPHRGFETVTIVYDGEVAHR DSTGAGGVIGPGDVQWMTAASGILHEEFHSEAFTKRGGPLEMVQLWVNLPAADKMGTPGYQTLLNADIPVVELPDGAGRA RIIAGEFDGRRGPARTHTPIDVWDVRLAAGGRARFPIAEGRTLAVVVLNGTLLVNGETVAREAQFVQLSRDGRDVEIEAN GDAKLLILSGEPIDEPVVGYGPFVMNSQEEIRTAIDDFNNGRFGQMPA >Mature_288_residues MKKIQGVYSAPRGHWVGDGFPVRSMFSYQSHGAHLSPFLLLDYAGPANFEPASAPRGVGQHPHRGFETVTIVYDGEVAHR DSTGAGGVIGPGDVQWMTAASGILHEEFHSEAFTKRGGPLEMVQLWVNLPAADKMGTPGYQTLLNADIPVVELPDGAGRA RIIAGEFDGRRGPARTHTPIDVWDVRLAAGGRARFPIAEGRTLAVVVLNGTLLVNGETVAREAQFVQLSRDGRDVEIEAN GDAKLLILSGEPIDEPVVGYGPFVMNSQEEIRTAIDDFNNGRFGQMPA
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=257, Percent_Identity=38.1322957198444, Blast_Score=149, Evalue=2e-36, Organism=Homo sapiens, GI4505823, Length=257, Percent_Identity=38.1322957198444, Blast_Score=149, Evalue=2e-36, Organism=Escherichia coli, GI1789847, Length=206, Percent_Identity=25.2427184466019, Blast_Score=68, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 30961; Mature: 30961
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIQGVYSAPRGHWVGDGFPVRSMFSYQSHGAHLSPFLLLDYAGPANFEPASAPRGVGQ CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTIVYDGEVAHRDSTGAGGVIGPGDVQWMTAASGILHEEFHSEAFTKRGGPL CCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCH EMVQLWVNLPAADKMGTPGYQTLLNADIPVVELPDGAGRARIIAGEFDGRRGPARTHTPI HEEEEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCC DVWDVRLAAGGRARFPIAEGRTLAVVVLNGTLLVNGETVAREAQFVQLSRDGRDVEIEAN EEEEEEEECCCCEECEECCCCEEEEEEEECEEEECCHHHHCCEEEEEEECCCCEEEEEEC GDAKLLILSGEPIDEPVVGYGPFVMNSQEEIRTAIDDFNNGRFGQMPA CCEEEEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKKIQGVYSAPRGHWVGDGFPVRSMFSYQSHGAHLSPFLLLDYAGPANFEPASAPRGVGQ CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC HPHRGFETVTIVYDGEVAHRDSTGAGGVIGPGDVQWMTAASGILHEEFHSEAFTKRGGPL CCCCCCEEEEEEECCCEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCH EMVQLWVNLPAADKMGTPGYQTLLNADIPVVELPDGAGRARIIAGEFDGRRGPARTHTPI HEEEEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCC DVWDVRLAAGGRARFPIAEGRTLAVVVLNGTLLVNGETVAREAQFVQLSRDGRDVEIEAN EEEEEEEECCCCEECEECCCCEEEEEEEECEEEECCHHHHCCEEEEEEECCCCEEEEEEC GDAKLLILSGEPIDEPVVGYGPFVMNSQEEIRTAIDDFNNGRFGQMPA CCEEEEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]