Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350925

Identifier: 115350925

GI number: 115350925

Start: 956493

End: 957752

Strand: Direct

Name: 115350925

Synonym: Bamb_0871

Alternate gene names: NA

Gene position: 956493-957752 (Clockwise)

Preceding gene: 115350924

Following gene: 115350926

Centisome position: 26.89

GC content: 70.48

Gene sequence:

>1260_bases
ATGGTCACTGTGAAATCGTTCGCGGTAGGCTGCGCGCTGTGGCTTGCGGCGCTGTCGCCCGCCGGCGCGCACGACGCCCC
GAAAGCTGCCGATCCGCATGCCGCGCACATGAGCATGCAGGCCGCGCCGGCGCAACAGAAGCAGCCGCTCGCGACCGGCG
CCGCGTTCGACGCGCGGCACCGCCTGTGGGTCGCATGGGTCGAAGGCGCGCACGTCGTCGTCGCGCATTCGGACGACGCG
GGCCGCACGCTGTCCACGCCCGTGACCGTCAACGCGATGCCCGAGCCGATCTACACGAGCGCGGAGAATCGACCGAAGAT
CGCAACGAGCCCCGACGGCCGCGCGGTGTACGTGTCGTGGTCGATGCCGCTCGATGCGCCGTACACCGGCATGGTGCGCT
TCTCGCGCTCGCTCGACGGCGGGGCGACCTGGAGCGTGCCCGTCACCGTGCATCGCGACCGGCAGGCGATCACGCACCGC
TTCGACATGATGGCCGTCGATCCGGCCGGCAACATCGCGATCGCGTGGATCGACAAGCGCGATCTCGTCGCGGCGAAGGC
GGCGGGGCAGGCGTACGAAGGCGCGGCCGTGTACTACGCGGTGTCGCGCGACGGCGGCGCGTCGTTCGAGCCCGAGCGCA
AGGTGACCGACCATACGTGCGAATGCTGCCGCATCGCGATGGCGATCGATCCGGCCGGACACATCGAAGGCGTGTGGCGC
AACGTATTCCCCGGACAGATCCGCGATCATGCGCTCGCGGTGCTGCCCGTGTCGGCGTCGGAGCCCGTCGTGCCGGTGCG
CGCGACGTTCTCGAACTGGCATGTCGCGGCCTGCCCGGAGCACGGGCCGGCACTTGCGATCACGCCCGATGGGACGCGTC
ATATCGCGTGGTTCGGCGTCGTCGAGGGCCGCGCCGACGTGTTCTACTCGCGCATCGGCGCCGACGGCCAGCCGCGCGGC
ACGCCGTGGGCATTCGGCGCGAATCCGGCGGTGCCGGCCGAGCAGGCATCGCATGCGGCGCTCGTCGCGCACGGCGACGT
CGTCTGGCTCGCATGGAAGGCGTTCGACGGCGACACGATGCAGATCAAGCTGCGTCGCTCCGACGATCGCGGCGAGCACT
GGTCGGCGCCGCGCGTGATCGCGTCGACGTCGGGCGCGAGCGACAATCCGCAACTGCTCGACGACACGGGGCGCATCTAC
CTGTCGTGGCGTACGCGTAACGACGGCTACCGGCTGATTCCCGTGGAGGGCGCGCAATGA

Upstream 100 bases:

>100_bases
ACCGTCACTGGACCGCATCGGTCGGCATCGACAACCTGACGGACCGCCGCTACTACGTGTTCCACCCGTATCCGGGTCGC
ACTTTCTTTGGAGAACTGAA

Downstream 100 bases:

>100_bases
AACGGCTGATGGTATTGATCGGCGCCGTGCTCGCGAGCCTGCCGGCGTGGGCCGGCGAGCTTCAGCCGCTGCGCGCGGCC
GAGGTCGCGAAGTTGTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: Signal Peptide Protein; BNR Repeat-Containing Protein; BNR/Asp-Box Repeat-Containing Protein; Glycosyl Hydrolase BNR Repeat-Containing Protein; Cytochrome C Biogenesis Protein; BNR/Asp-Box Repeat Domain Protein

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA
GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR
FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR
NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG
TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY
LSWRTRNDGYRLIPVEGAQ

Sequences:

>Translated_419_residues
MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA
GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR
FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR
NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG
TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY
LSWRTRNDGYRLIPVEGAQ
>Mature_419_residues
MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARHRLWVAWVEGAHVVVAHSDDA
GRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSWSMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHR
FDMMAVDPAGNIAIAWIDKRDLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR
NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGVVEGRADVFYSRIGADGQPRG
TPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTMQIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIY
LSWRTRNDGYRLIPVEGAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45006; Mature: 45006

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARH
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC
RLWVAWVEGAHVVVAHSDDAGRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSW
EEEEEEECCCEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEE
SMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMMAVDPAGNIAIAWIDKR
CCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHHHHHHEEEEEEECCCCCEEEEEECCC
DLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR
CEEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEEECCCHHHHHHHH
NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGV
CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEECCCCCEEEEEEEE
VEGRADVFYSRIGADGQPRGTPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTM
ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEE
QIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIYLSWRTRNDGYRLIPVEGAQ
EEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC
>Mature Secondary Structure
MVTVKSFAVGCALWLAALSPAGAHDAPKAADPHAAHMSMQAAPAQQKQPLATGAAFDARH
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCC
RLWVAWVEGAHVVVAHSDDAGRTLSTPVTVNAMPEPIYTSAENRPKIATSPDGRAVYVSW
EEEEEEECCCEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEE
SMPLDAPYTGMVRFSRSLDGGATWSVPVTVHRDRQAITHRFDMMAVDPAGNIAIAWIDKR
CCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCHHHHHHEEEEEEECCCCCEEEEEECCC
DLVAAKAAGQAYEGAAVYYAVSRDGGASFEPERKVTDHTCECCRIAMAIDPAGHIEGVWR
CEEEEHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEEECCCHHHHHHHH
NVFPGQIRDHALAVLPVSASEPVVPVRATFSNWHVAACPEHGPALAITPDGTRHIAWFGV
CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCEEEECCCCCEEEEEEEE
VEGRADVFYSRIGADGQPRGTPWAFGANPAVPAEQASHAALVAHGDVVWLAWKAFDGDTM
ECCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEE
QIKLRRSDDRGEHWSAPRVIASTSGASDNPQLLDDTGRIYLSWRTRNDGYRLIPVEGAQ
EEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA