| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350588
Identifier: 115350588
GI number: 115350588
Start: 600062
End: 600625
Strand: Direct
Name: 115350588
Synonym: Bamb_0534
Alternate gene names: NA
Gene position: 600062-600625 (Clockwise)
Preceding gene: 115350587
Following gene: 115350592
Centisome position: 16.87
GC content: 64.36
Gene sequence:
>564_bases ATGAGCGACTCCATCTACGCGCACGACACGGCGGGGGCGGAACTGTTCGCGGCCGGCGACGGCAATCTGTTCCAGCGCGT GATGCAACTACACGCGGTGGCGCAGGCTGGCGGCGCGTCGGAGCAACAGGAAGCCGAGCCCGGGCTTTCATCGAACGAGG AGCCTATGAGCCTTTTCACGACCGTGCGACCCAACCTCGTGCAGTCGATCCGCGCGTTCCGCGTGCAGGATCTCGCCGAC GAAGCCAGCCGGCTCGGCCAGCATTTCCTGTACGCGTATTGCGGCGCAGCGCAGTCGAAGCAGGAGGTGATGGAGACGAT CGCGACGTCGTTCCTGTTTCCGAAGCATTTCGGGAAGAACTACGACGCGCTGTACGACTGCCTGACCGACCTCGTCGCGA AGGCCGGCGCGCAGCCCGGTTTCGTGATCGTCCTCGAAGGGCTGCCGATCGCGCAGAAATTCGACAAGGAAGGGCGCGAG ACGCTGCTCGACGTGTTCCGCGAAGCCGCCGAGTTCTGGGCCGAGCGCAAGGTCGCGTTCCGCGTGTTCTATTCGTTCGC GTAA
Upstream 100 bases:
>100_bases GTCTGTGGCGGGCCGTTGCGCCGGATCGACAACTGTTATTACACGGACGACCACTACAACAGTTTTAAACGTATTGTTGA ATGACTTCGGGATGAATGGC
Downstream 100 bases:
>100_bases GCACGTATCCATCGGCCGCGCACCTGCGGTCGATTTGCCGAAAAGCCCGCGTCGAGCGGGCTTTTTTGCGTCCGCGCGAG GCGGCACCTCCCGCCCGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Barstar Family Protein; Ribonuclease Inhibitor Barstar; Ribonuclease Inhibitor
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLAD EASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRE TLLDVFREAAEFWAERKVAFRVFYSFA
Sequences:
>Translated_187_residues MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLAD EASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRE TLLDVFREAAEFWAERKVAFRVFYSFA >Mature_186_residues SDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLADE ASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRET LLDVFREAAEFWAERKVAFRVFYSFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20643; Mature: 20512
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFT CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHH TVRPNLVQSIRAFRVQDLADEASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKN HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC YDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRETLLDVFREAAEFWAERKVAF HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVFYSFA HHHHHCC >Mature Secondary Structure SDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFT CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHH TVRPNLVQSIRAFRVQDLADEASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKN HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC YDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRETLLDVFREAAEFWAERKVAF HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVFYSFA HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA