Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350588

Identifier: 115350588

GI number: 115350588

Start: 600062

End: 600625

Strand: Direct

Name: 115350588

Synonym: Bamb_0534

Alternate gene names: NA

Gene position: 600062-600625 (Clockwise)

Preceding gene: 115350587

Following gene: 115350592

Centisome position: 16.87

GC content: 64.36

Gene sequence:

>564_bases
ATGAGCGACTCCATCTACGCGCACGACACGGCGGGGGCGGAACTGTTCGCGGCCGGCGACGGCAATCTGTTCCAGCGCGT
GATGCAACTACACGCGGTGGCGCAGGCTGGCGGCGCGTCGGAGCAACAGGAAGCCGAGCCCGGGCTTTCATCGAACGAGG
AGCCTATGAGCCTTTTCACGACCGTGCGACCCAACCTCGTGCAGTCGATCCGCGCGTTCCGCGTGCAGGATCTCGCCGAC
GAAGCCAGCCGGCTCGGCCAGCATTTCCTGTACGCGTATTGCGGCGCAGCGCAGTCGAAGCAGGAGGTGATGGAGACGAT
CGCGACGTCGTTCCTGTTTCCGAAGCATTTCGGGAAGAACTACGACGCGCTGTACGACTGCCTGACCGACCTCGTCGCGA
AGGCCGGCGCGCAGCCCGGTTTCGTGATCGTCCTCGAAGGGCTGCCGATCGCGCAGAAATTCGACAAGGAAGGGCGCGAG
ACGCTGCTCGACGTGTTCCGCGAAGCCGCCGAGTTCTGGGCCGAGCGCAAGGTCGCGTTCCGCGTGTTCTATTCGTTCGC
GTAA

Upstream 100 bases:

>100_bases
GTCTGTGGCGGGCCGTTGCGCCGGATCGACAACTGTTATTACACGGACGACCACTACAACAGTTTTAAACGTATTGTTGA
ATGACTTCGGGATGAATGGC

Downstream 100 bases:

>100_bases
GCACGTATCCATCGGCCGCGCACCTGCGGTCGATTTGCCGAAAAGCCCGCGTCGAGCGGGCTTTTTTGCGTCCGCGCGAG
GCGGCACCTCCCGCCCGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Barstar Family Protein; Ribonuclease Inhibitor Barstar; Ribonuclease Inhibitor

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLAD
EASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRE
TLLDVFREAAEFWAERKVAFRVFYSFA

Sequences:

>Translated_187_residues
MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLAD
EASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRE
TLLDVFREAAEFWAERKVAFRVFYSFA
>Mature_186_residues
SDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFTTVRPNLVQSIRAFRVQDLADE
ASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKNYDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRET
LLDVFREAAEFWAERKVAFRVFYSFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20643; Mature: 20512

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFT
CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHH
TVRPNLVQSIRAFRVQDLADEASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKN
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
YDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRETLLDVFREAAEFWAERKVAF
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVFYSFA
HHHHHCC
>Mature Secondary Structure 
SDSIYAHDTAGAELFAAGDGNLFQRVMQLHAVAQAGGASEQQEAEPGLSSNEEPMSLFT
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHH
TVRPNLVQSIRAFRVQDLADEASRLGQHFLYAYCGAAQSKQEVMETIATSFLFPKHFGKN
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
YDALYDCLTDLVAKAGAQPGFVIVLEGLPIAQKFDKEGRETLLDVFREAAEFWAERKVAF
HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVFYSFA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA