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The map label for this gene is ycdI [C]

Identifier: 115350460

GI number: 115350460

Start: 456370

End: 456975

Strand: Direct

Name: ycdI [C]

Synonym: Bamb_0406

Alternate gene names: 115350460

Gene position: 456370-456975 (Clockwise)

Preceding gene: 115350459

Following gene: 115350461

Centisome position: 12.83

GC content: 67.99

Gene sequence:

>606_bases
ATGTCTGTCAAACCTGCTCCCACCACTGTTTCGATTCACGAACTGATCGCGGGCCGCTGGAGCCCGCGCGCGTATTCGGA
CGAGCCGATCAGCGCCGCCGATCTGCACGCGGTGCTCGAAGCCGCGCGCTGGGCGCCGTCCGCATACAACGCGCAGCCGT
GGCGCTTCATCGTCTTCGATCGCACGCAGGACGAAGCAGCGTTCAAGCGCGCATTCGCGACACTGGTGCCGTTCAACCAG
GCCTGGAACGCGCCGGCGCCGGTGCTGATCGCCGTGACTTCGCACACGCTCACGCCGAAGGGCGAGCCGGCGTCGACCGC
ACTGTATGACGCGGGCGCCGCGGCGATGTCGCTGGTGCTGCAGGCGCACGCGCTGGGCCTTGCCGCGCACCAGATGAGCG
GCTTCGACGCGAAGGCGTTCCGCGACGCGTTCGAGATTCCGGCCGACGTCGCCATTCCGGCGCTCATCTCGCTCGGCCAC
TACGGCAACGTCGACAAGCTCGATCCGGTGCTGCGCGACCGCGAAAAGGCGCCCCGCACGCGTCACGCGCTCGGCGAGGT
CGTCTATGCGGGCGCATGGAAGAAGGGTTTCGAAGCGGTAGCCTGA

Upstream 100 bases:

>100_bases
TTGCATTGCGCGGGACGATCGGGCGCGTGATGGCTCAAGCGGTTATGCTTGCGGTTCGGCGCGCGTTCGCGCCCCTTCAT
CGATGTCAGCGAGGAACCGC

Downstream 100 bases:

>100_bases
TTCCCGGGGCAGGCGGCGGGGTGCGTTTGGCCTCCGACCGCACCTGTCGCCCCTGACGCGCCTGCCGGCGCGCCCCATCC
CCGCCCCTCCGGGCCGGTTG

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSVKPAPTTVSIHELIAGRWSPRAYSDEPISAADLHAVLEAARWAPSAYNAQPWRFIVFDRTQDEAAFKRAFATLVPFNQ
AWNAPAPVLIAVTSHTLTPKGEPASTALYDAGAAAMSLVLQAHALGLAAHQMSGFDAKAFRDAFEIPADVAIPALISLGH
YGNVDKLDPVLRDREKAPRTRHALGEVVYAGAWKKGFEAVA

Sequences:

>Translated_201_residues
MSVKPAPTTVSIHELIAGRWSPRAYSDEPISAADLHAVLEAARWAPSAYNAQPWRFIVFDRTQDEAAFKRAFATLVPFNQ
AWNAPAPVLIAVTSHTLTPKGEPASTALYDAGAAAMSLVLQAHALGLAAHQMSGFDAKAFRDAFEIPADVAIPALISLGH
YGNVDKLDPVLRDREKAPRTRHALGEVVYAGAWKKGFEAVA
>Mature_200_residues
SVKPAPTTVSIHELIAGRWSPRAYSDEPISAADLHAVLEAARWAPSAYNAQPWRFIVFDRTQDEAAFKRAFATLVPFNQA
WNAPAPVLIAVTSHTLTPKGEPASTALYDAGAAAMSLVLQAHALGLAAHQMSGFDAKAFRDAFEIPADVAIPALISLGHY
GNVDKLDPVLRDREKAPRTRHALGEVVYAGAWKKGFEAVA

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21625; Mature: 21493

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKPAPTTVSIHELIAGRWSPRAYSDEPISAADLHAVLEAARWAPSAYNAQPWRFIVFD
CCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
RTQDEAAFKRAFATLVPFNQAWNAPAPVLIAVTSHTLTPKGEPASTALYDAGAAAMSLVL
CCCHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
QAHALGLAAHQMSGFDAKAFRDAFEIPADVAIPALISLGHYGNVDKLDPVLRDREKAPRT
HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
RHALGEVVYAGAWKKGFEAVA
HHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
SVKPAPTTVSIHELIAGRWSPRAYSDEPISAADLHAVLEAARWAPSAYNAQPWRFIVFD
CCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
RTQDEAAFKRAFATLVPFNQAWNAPAPVLIAVTSHTLTPKGEPASTALYDAGAAAMSLVL
CCCHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
QAHALGLAAHQMSGFDAKAFRDAFEIPADVAIPALISLGHYGNVDKLDPVLRDREKAPRT
HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
RHALGEVVYAGAWKKGFEAVA
HHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]