BacMap

Definition	Archaeoglobus fulgidus DSM 4304, complete genome.
Accession	NC_000917
Length	2,178,400

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The map label for this gene is rfbB-1

Identifier: 11497662

GI number: 11497662

Start: 44093

End: 44806

Strand: Reverse

Name: rfbB-1

Synonym: AF0041

Alternate gene names: 11497662

Gene position: 44806-44093 (Counterclockwise)

Preceding gene: 11497663

Following gene: 11497656

Centisome position: 2.06

GC content: 41.6

Gene sequence:

>714_bases
ATGATAGAGGCTGAGGGGATATCGAAGAAGTTCAGAATACCAAGCGAGAAAAGGTTTACGTTATTTGAAGAGCTCTCAGC
ATTTTTTAAAGGTAAAAGAGATTTCGTAGAGTTCTGGGCACTCAGGGATGTAAGCTTCAGAGTAAAAAAAGGCGAAACAT
TCGGAATCTTCGGACCAAATGGCTCGGGCAAATCCACGATCCTCAAGATAATTGCCGGAATTCTTTATCCTGACACTGGT
AGTTTAAGTGTTTCTGGAAAGGTCACACCAATTCTTGAGCTCGGTGTGGGCTTCAATCCAGAGTTAACGGCTAAGGAGAA
CGTTTACCTTTACGGAGTCATTATGGGTATGAGTAAGGAGGAAATAAGAAGTAAGATTGAAGAAATCTTCAGGTTTGCAG
AACTTGAAAAGTTCAAAAACATGAAGCTCAAGAACTACTCATCTGGTATGTATGCAAGGCTAGCATTCGCAACAGCAGTA
GCAACTGAGCCTGAAATTCTCCTGATCGACGAAGTTCTAGCCGTCGGTGATATCTATTTCCAAAGAAAGTGTATAGGCAG
AATTAGGGAGTTAAAACAGAATGGAACCACGATAGTCCTCGTTTCCCATTCTCCAAATACTTTACTGGAGTTGTGCGATA
GAGTCATGTTGATCGAGGCTGGAACTGTAAAAGCTATAGGTGAACCTGGAAAAGTACTTGAGGGCTATCTTTAA

Upstream 100 bases:

>100_bases
TGCTGGAAAAATTTATTTACTTTTTATTAATATCTCTTGCACTCACCTTTGCTGGTCAGTTGTTTTTTAGAAGAATGCAG
AAGAGATTTGGTGAAGTTCT

Downstream 100 bases:

>100_bases
AACCGCAAAAGAGGGCTGTTGAGCATTTAAAGAGAGAACTTCAAGGAATCACTTAACTTCAAAGATTTTCACAGTTCCGA
AATTTTTCAGGAGCCTGAAG

Product: polysaccharide ABC transporter, ATP-binding protein (rfbB-1)

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG
SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV
ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL

Sequences:

>Translated_237_residues
MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG
SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV
ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL
>Mature_237_residues
MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG
SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV
ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL

Specific function: Influences the expression of the surface array protein gene (vapA). May have both regulatory and transport activities [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI30795238, Length=200, Percent_Identity=29, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI27881501, Length=200, Percent_Identity=29, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=28.3653846153846, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI27262624, Length=234, Percent_Identity=29.0598290598291, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI27262626, Length=234, Percent_Identity=29.0598290598291, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=28.2407407407407, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=26.3636363636364, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=30.6122448979592, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=29.8429319371728, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI6005701, Length=196, Percent_Identity=29.5918367346939, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=26.3681592039801, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI21536376, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI89111135, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592964, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI46592971, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI46592915, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI46592956, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI46592978, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI46592898, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=29.126213592233, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081709, Length=201, Percent_Identity=28.3582089552239, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787370, Length=203, Percent_Identity=27.5862068965517, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87081782, Length=215, Percent_Identity=30.6976744186047, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=28.8461538461538, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=29.6482412060301, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=27.8846153846154, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789032, Length=213, Percent_Identity=25.8215962441315, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=27.1889400921659, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=25.6637168141593, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=27.2321428571429, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=27.1844660194175, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=27.1428571428571, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789891, Length=225, Percent_Identity=25.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=204, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=27.0935960591133, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=27.7272727272727, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082268, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786703, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=29, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787500, Length=243, Percent_Identity=23.8683127572016, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787143, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790739, Length=211, Percent_Identity=25.5924170616114, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=213, Percent_Identity=27.2300469483568, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788540, Length=197, Percent_Identity=27.4111675126904, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787105, Length=199, Percent_Identity=24.1206030150754, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=25.9911894273128, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=24.7663551401869, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787759, Length=228, Percent_Identity=24.1228070175439, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786872, Length=202, Percent_Identity=28.7128712871287, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=27.8048780487805, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17565586, Length=201, Percent_Identity=26.3681592039801, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=211, Percent_Identity=27.0142180094787, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17539902, Length=254, Percent_Identity=25.9842519685039, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=245, Percent_Identity=24.4897959183673, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=214, Percent_Identity=25.7009345794392, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17552010, Length=213, Percent_Identity=25.3521126760563, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=217, Percent_Identity=24.8847926267281, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=208, Percent_Identity=26.4423076923077, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=29.8969072164948, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=29.8969072164948, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI116007328, Length=210, Percent_Identity=27.6190476190476, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28574150, Length=210, Percent_Identity=27.6190476190476, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24643674, Length=203, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221512771, Length=201, Percent_Identity=27.8606965174129, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24650853, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24650855, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281362751, Length=176, Percent_Identity=28.4090909090909, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28573571, Length=206, Percent_Identity=26.2135922330097, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573573, Length=207, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17136592, Length=218, Percent_Identity=24.3119266055046, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582014, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582012, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI85725262, Length=176, Percent_Identity=26.1363636363636, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28574259, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI62484234, Length=204, Percent_Identity=28.921568627451, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648279, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85724864, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24580555, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85816269, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24580553, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI161078426, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21357907, Length=203, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581191, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581189, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581193, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581195, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281363262, Length=216, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24653245, Length=216, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26467; Mature: 26467

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCEEEEECCC
GSGKSTILKIIAGILYPDTGSLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKE
CCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCHH
EIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAVATEPEILLIDEVLAVGDIYF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH
QRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEEEECCCEEECCCCCHHHCCCC
>Mature Secondary Structure
MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCEEEEECCC
GSGKSTILKIIAGILYPDTGSLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKE
CCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCHH
EIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAVATEPEILLIDEVLAVGDIYF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH
QRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEEEECCCEEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8491726 [H]