Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is 114800437

Identifier: 114800437

GI number: 114800437

Start: 2757583

End: 2759352

Strand: Direct

Name: 114800437

Synonym: HNE_2597

Alternate gene names: NA

Gene position: 2757583-2759352 (Clockwise)

Preceding gene: 114798416

Following gene: 114797567

Centisome position: 74.43

GC content: 66.16

Gene sequence:

>1770_bases
ATGATCCCCGCCCGCTCGACACCTGCCGCCTTCAGCGCCGCCGCGCTCCTCCTGGCCACCCTGCTCTCCGCCTGCGCCGC
CCCGGCTGAAACGCCCACGCTCGCCCCCGCCGAAGTGGCGACTCCGACGGACATGGAAATCGCCCTCACCCCCCGCCGCC
CCACCGGCGACAAGGTCGAGACCATCGACGTGACGCTCACCATCCGCGAGCCTGCCCTCGCAGCGGGCGACACCTTCCTC
TCCATGGCCATCGTTCGCGTCATGGCGCCAGGTGCGCTCAATCGCCCCGAAACACTGATCGCAGAAGACGCCGCCGGCCC
GCTGCCCCTCACCATCGAGGAAGACCCCGTCGACCCGTCAGACTTCCGCCAGGACCGACGCTGGCTCGCCGCCCGCGCCA
CGCAGGGCGACGTCACCGTCCGCTACACAATCGAGCCGCGCGTCATCACATCCGCCACCCGCCCCGGCCCGCTGATCGAC
ACGCGCACAGAGCTCACCGGCTTTTACGGCTCAGGCAACACAATGCTTGCCCTTCCCGTCTCCGGTTGGCCGCGCGAGGT
AGCGCTGGACTGGAACCTCGAAGACCTCACCCCCGGCGCCCGCGCTGCCTCCAGCCTCGGCGAAGGCGATGTCACCGCCA
CGGTCACCGCGCAAAATCTCAACAACAGCTTCTTCTTCGCCGGCCCCCTGCGCAGCCAGCCCGAAGACGGCGCCGGCGAC
TTTGCCATCTACTGGATCACCCCCGCCGCCTTCGATCTCGACGGCGCCGCCGCCTGGACCCAGGAAGCCTACGCCTATTT
CAACGGCTTCTTCGGCGCCAGCGACACGCCCTTCCGCGTCTTCATGCGCACCACCGAACGCTTCCAGGGCGGCGGTGGCG
GCGGCTTCAACTCCTTCATCTTCGGCACCGTCGAAGGCGAAGATCGCGACCCCGATGAAGTCCGCGGCCTTCTCGCCCAC
GAGGCGCTCCACCATTTCGTTGGTGGATATGGCGATGGCGGCGGCGCGGGCGGCCAGCAATGGTATTCGGAAGGGGTGAC
CAATTACTACACCGTGGTGCTGCCTTACCGCGCCGGCCTCACCAGCCTTGAACACTACATCAACGACTTCAACGGCTACG
CCAAATCCTACTACACCAATCCGCAGTCGAACCTTTCCAACACCGAAGTCACCCGCCTCTTCTTTGCCGACGGAAACGCC
CAGATCGTGCCCTATAATCGCGGGCCGCTCTATGTCGCCCTCACCGATGCCCGCATCCGTGCCGCGTCCGGCGGAGCGCT
CCGCGTGGACAATCTCATCTTCGATTTCATTGACGCACAGAAAGGTGCCGAGGACGGCGTCGCCCTCTGGCATGATCTGG
CCGAAGTCTATCTCGGCGAAGAAGGCGGCGCCGAATTCCGCGCCATGATGGAGGGCGCCCCGCTGGATCTACCCTCAGAC
CTCTTCGGCCCGTGCTTTGTGGCCGAAGACCAGATGTTGCAGAACTTCGTCGTCGGGTTCCGTCCCTATAAGGATGAAGA
CGGCCGCACACGGGCCGGCCCCATCGTGCCGGGCACCGCCGCCGAAGCCGCAGGCGTCGCGCGCTACGACATCATCACAA
ACCCCGAAGCCCTCGAAGCAGCCGAAACCGCCGCCCCCGGCACACCGCTCACCCTGAACCTTCAGCGCGATACCGAAACC
CTCAGCCGCACCTATACGCCATGGACGTCCCCCACTCCCGGCAAGCAATGGGTCCGCACGCAGGTTCCCGAAACCGACTG
CAATCTCTGA

Upstream 100 bases:

>100_bases
TAGATATTTCGCTGACTTCCACACGCCCCGCCCTATTCGATTAGAGTTCCCCGGGCGGCGCGCTAGTCTCTCCCTGACAC
GCCCCAGAGGAGCCCGCCTT

Downstream 100 bases:

>100_bases
AATCAGGTCCGGCAGTCCGGCTACCGGCGCCCCACTCCGACAATGCGTTTGGCCAAACCCCCGATGAAACGGCTACCCGC
ATTCGTGGCGGTAAACACCC

Product: putative lipoprotein

Products: NA

Alternate protein names: Peptidase; Trypsin-Like Serine Protease

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL
SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID
TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD
FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH
EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA
QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD
LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET
LSRTYTPWTSPTPGKQWVRTQVPETDCNL

Sequences:

>Translated_589_residues
MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL
SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID
TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD
FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH
EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA
QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD
LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET
LSRTYTPWTSPTPGKQWVRTQVPETDCNL
>Mature_589_residues
MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL
SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID
TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD
FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH
EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA
QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD
LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET
LSRTYTPWTSPTPGKQWVRTQVPETDCNL

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63289; Mature: 63289

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCEE
TIDVTLTIREPALAAGDTFLSMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPS
EEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHH
DFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLIDTRTELTGFYGSGNTMLALPV
HHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCEECCHHEEEEECCCCEEEEEEC
SGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD
CCCCCEEEEECCHHHCCCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC
FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFI
EEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEE
FGTVEGEDRDPDEVRGLLAHEALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGL
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCH
TSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNAQIVPYNRGPLYVALTDARIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECCEEE
AASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD
ECCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHH
LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEA
HCCCEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHCCCEEEEEECCCHHHHH
AETAAPGTPLTLNLQRDTETLSRTYTPWTSPTPGKQWVRTQVPETDCNL
HHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCEE
TIDVTLTIREPALAAGDTFLSMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPS
EEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHH
DFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLIDTRTELTGFYGSGNTMLALPV
HHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCEECCHHEEEEECCCCEEEEEEC
SGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD
CCCCCEEEEECCHHHCCCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC
FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFI
EEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEE
FGTVEGEDRDPDEVRGLLAHEALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGL
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCH
TSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNAQIVPYNRGPLYVALTDARIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECCEEE
AASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD
ECCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHH
LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEA
HCCCEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHCCCEEEEEECCCHHHHH
AETAAPGTPLTLNLQRDTETLSRTYTPWTSPTPGKQWVRTQVPETDCNL
HHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA