| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yvfT [H]
Identifier: 114800098
GI number: 114800098
Start: 1291683
End: 1293713
Strand: Direct
Name: yvfT [H]
Synonym: HNE_1263
Alternate gene names: 114800098
Gene position: 1291683-1293713 (Clockwise)
Preceding gene: 114799664
Following gene: 114798031
Centisome position: 34.86
GC content: 66.13
Gene sequence:
>2031_bases ATGGCGGATGGGCGGGACACGCAAGGCGGCTGTGCCCCCCTGTTCGGGGGGTGGACCGGGGCGGGCGCATGGGGTGCTGG CAGGGGCGCGCAGCAGTTTACATCCGGCGCGGGGCAGCATCAGATAGTGAGCGTCGGTATGGGGAAGAGGGCGGGCATGA AGCTGCAGGATATGAATACGCCGCTGGTGCGCTTTGCGGTGCCGGCATTGATTGTCGTGGCGGTGACGGCCGGGATGGCG GTCTGGGGGCTGCAGCCGGCGTCAGGATGGACGGGTGAGGTGAGCGCGTGGCGGTCGCCCTTCGCGGTGCATCCGGGGCT GTGGGTGTCGCTGCTGGTCGGGTTTGGGGCGTGCCTGGTGTCGACCTGGGTGTGGGCGCTGAAGCCGGCGGACCCTGCGG CGATCCTGTTTGCGGTGAGCGGGCTGACGACGCTGATGTTCTCGGTGTCCTCAACCGTGTGGCTGTTTGCGATGGTGTTG CCCGACAGCGCCTACATGACGGCGGCGATCATCAACTGCATCGGCGCGTCGGGCTTTGGCATCGTGATGATGTGCCTGTT CCTGATCTATCCGGTGAAGCTGCCCTATTGGCGCTGGCTGATGGCGGCGACGGTGCTGGGGTTTGGGGCGGTGACGTATT GGGTGATGTTTGGTCCGTCGCCGGATTTCATGCTGGTGCATCCGATTACCTTCTGGGAGATGGTGGGCATCTTCGTGCTG GTGGGCTGGCAGATCTTTGCGACGCGAGGTGATCCGGCGCAGCGGTCGATTGCGTTGTGGCTGGGCGCGGCGGTGGTGCT GGGGGCGGGCGGGTTTATCTCGACGGTGGCGTTTCCGCATACGTTCGGGTTTCTGCCGCTGCTGAACGAGAACATCGCGT TCGGATTTTTCCTGCTGATCTATGCGGCGCTGACCGTTGGGCTGATGCGCTTCCGCGTGTTCGGGCTGGGCGGCTGGGCG TTCCAGCTGATGTTCCACTTCCTGGCGGCGTTGGGCGTTCTGGCGCTGGATCTGGCGCTGATCGGGATGCTCTCATTTGA GCCGGGGGCGGCGTTCTCGGTGGCGCTGTTGCTGGCGGCGGCGGTGTATCTGCCGGTGCGCAGCCTGGCGTGGCGCAAGC TGTCGGGGCAGGCGCGGCCCGATGAGGCGGAGCTGTTCCGGTCGGTGATCGACATTGCTCTGCGCCCCAGCGGAGAGCAG CGGGCGGAGCGCTGGCGCAAGCTGATGCGGGATGTGTTCGGGCCGCTGGAGATCAAGGCCGTTGAGGCAGGCGGGGCAAA GGTGCGCGTGGAGGATGAGGGCACGTTGATGCTGTTGCCGGCGGCGGCAGATTCCCCGCCGCTGAGCCTGCGCTATCGCA ATGGCGGGCGGGCGCTCTATTCGCCCAAGGATGTCGCGCTGGCGACGCAGATCGTGAAGCTGATGCGGTATGCGGAGGAA AACCGCAACGCCTATGACCGGGGCGTGTCAGAAGAACGCGCGCGGATTGCGCGGGACATTCACGACAATATCGGGGCGCA GCTGCTGCGCGCGCTGCACTCGCGCGAGAGCGGCCGGAAGGACGCGATGATCCGCGAGACGCTGACCGACATCCGCGATG TGATCAACAATGCGCAAGGCGCCGAGGCGCCGATGGAGGATGTGCTGGCGGACCTGCGGGCCGAGACGGCAGACCGGCTG GAGCCGCATGGCGTCATGCTGAGCTGGAATTTGCATGCGGCACCCGGCGCGTTGCTGTCCCGGCAGAAGGTGCATGCGCT GCGGGCGCTGATCCGGGAAGCGGTGAGCAACACGATCAAGCATGCAGAGGCGCGCTCGGTTGAGGTGACCATTCGTCTGG ATGCGGACTGGCTCTCGCTGAAGGTGACCGATGATGGCAAGGGCATGCCGGCGCAGACGGCTTCGCTGGGCAATGGCCTG GGAAATATGAAGCTGCGCGTGGAGAGCTTCGGCGGCGATATTTCGCTGGAGGGCGGGGAGGGCACGTGCCTCGCCGCGCG TATTCCGGTGTTCGAGATGGCGGCGGAGTAG
Upstream 100 bases:
>100_bases GGCAGGGCCAGGGCCAGAGCCAGGGTAAGTGCGGCGAGGGCGCCGGCAATCAGGTGCTTCGGACTGGTCATGGGCGCGCC TCCGGGTTGCCGGCAGTATG
Downstream 100 bases:
>100_bases GCCGGTCAGGTCCGGTCGGTGGTCAGGCCCATCCGGGTGGCGTGCCAGGAGGCTTCGGCGCGGGAGGAAATGCCGAGTTT GCGGTAGATACCCTTGATGT
Product: putative sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 676; Mature: 675
Protein sequence:
>676_residues MADGRDTQGGCAPLFGGWTGAGAWGAGRGAQQFTSGAGQHQIVSVGMGKRAGMKLQDMNTPLVRFAVPALIVVAVTAGMA VWGLQPASGWTGEVSAWRSPFAVHPGLWVSLLVGFGACLVSTWVWALKPADPAAILFAVSGLTTLMFSVSSTVWLFAMVL PDSAYMTAAIINCIGASGFGIVMMCLFLIYPVKLPYWRWLMAATVLGFGAVTYWVMFGPSPDFMLVHPITFWEMVGIFVL VGWQIFATRGDPAQRSIALWLGAAVVLGAGGFISTVAFPHTFGFLPLLNENIAFGFFLLIYAALTVGLMRFRVFGLGGWA FQLMFHFLAALGVLALDLALIGMLSFEPGAAFSVALLLAAAVYLPVRSLAWRKLSGQARPDEAELFRSVIDIALRPSGEQ RAERWRKLMRDVFGPLEIKAVEAGGAKVRVEDEGTLMLLPAAADSPPLSLRYRNGGRALYSPKDVALATQIVKLMRYAEE NRNAYDRGVSEERARIARDIHDNIGAQLLRALHSRESGRKDAMIRETLTDIRDVINNAQGAEAPMEDVLADLRAETADRL EPHGVMLSWNLHAAPGALLSRQKVHALRALIREAVSNTIKHAEARSVEVTIRLDADWLSLKVTDDGKGMPAQTASLGNGL GNMKLRVESFGGDISLEGGEGTCLAARIPVFEMAAE
Sequences:
>Translated_676_residues MADGRDTQGGCAPLFGGWTGAGAWGAGRGAQQFTSGAGQHQIVSVGMGKRAGMKLQDMNTPLVRFAVPALIVVAVTAGMA VWGLQPASGWTGEVSAWRSPFAVHPGLWVSLLVGFGACLVSTWVWALKPADPAAILFAVSGLTTLMFSVSSTVWLFAMVL PDSAYMTAAIINCIGASGFGIVMMCLFLIYPVKLPYWRWLMAATVLGFGAVTYWVMFGPSPDFMLVHPITFWEMVGIFVL VGWQIFATRGDPAQRSIALWLGAAVVLGAGGFISTVAFPHTFGFLPLLNENIAFGFFLLIYAALTVGLMRFRVFGLGGWA FQLMFHFLAALGVLALDLALIGMLSFEPGAAFSVALLLAAAVYLPVRSLAWRKLSGQARPDEAELFRSVIDIALRPSGEQ RAERWRKLMRDVFGPLEIKAVEAGGAKVRVEDEGTLMLLPAAADSPPLSLRYRNGGRALYSPKDVALATQIVKLMRYAEE NRNAYDRGVSEERARIARDIHDNIGAQLLRALHSRESGRKDAMIRETLTDIRDVINNAQGAEAPMEDVLADLRAETADRL EPHGVMLSWNLHAAPGALLSRQKVHALRALIREAVSNTIKHAEARSVEVTIRLDADWLSLKVTDDGKGMPAQTASLGNGL GNMKLRVESFGGDISLEGGEGTCLAARIPVFEMAAE >Mature_675_residues ADGRDTQGGCAPLFGGWTGAGAWGAGRGAQQFTSGAGQHQIVSVGMGKRAGMKLQDMNTPLVRFAVPALIVVAVTAGMAV WGLQPASGWTGEVSAWRSPFAVHPGLWVSLLVGFGACLVSTWVWALKPADPAAILFAVSGLTTLMFSVSSTVWLFAMVLP DSAYMTAAIINCIGASGFGIVMMCLFLIYPVKLPYWRWLMAATVLGFGAVTYWVMFGPSPDFMLVHPITFWEMVGIFVLV GWQIFATRGDPAQRSIALWLGAAVVLGAGGFISTVAFPHTFGFLPLLNENIAFGFFLLIYAALTVGLMRFRVFGLGGWAF QLMFHFLAALGVLALDLALIGMLSFEPGAAFSVALLLAAAVYLPVRSLAWRKLSGQARPDEAELFRSVIDIALRPSGEQR AERWRKLMRDVFGPLEIKAVEAGGAKVRVEDEGTLMLLPAAADSPPLSLRYRNGGRALYSPKDVALATQIVKLMRYAEEN RNAYDRGVSEERARIARDIHDNIGAQLLRALHSRESGRKDAMIRETLTDIRDVINNAQGAEAPMEDVLADLRAETADRLE PHGVMLSWNLHAAPGALLSRQKVHALRALIREAVSNTIKHAEARSVEVTIRLDADWLSLKVTDDGKGMPAQTASLGNGLG NMKLRVESFGGDISLEGGEGTCLAARIPVFEMAAE
Specific function: Member of the two-component regulatory system yvfT/yvfU. Probably activates yvfU by phosphorylation [H]
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011712 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 72890; Mature: 72759
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGRDTQGGCAPLFGGWTGAGAWGAGRGAQQFTSGAGQHQIVSVGMGKRAGMKLQDMNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEECCCC PLVRFAVPALIVVAVTAGMAVWGLQPASGWTGEVSAWRSPFAVHPGLWVSLLVGFGACLV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEECCHHHHHHHHHHHHHHH STWVWALKPADPAAILFAVSGLTTLMFSVSSTVWLFAMVLPDSAYMTAAIINCIGASGFG HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH IVMMCLFLIYPVKLPYWRWLMAATVLGFGAVTYWVMFGPSPDFMLVHPITFWEMVGIFVL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCHHHHHHHHHHHH VGWQIFATRGDPAQRSIALWLGAAVVLGAGGFISTVAFPHTFGFLPLLNENIAFGFFLLI HHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHH YAALTVGLMRFRVFGLGGWAFQLMFHFLAALGVLALDLALIGMLSFEPGAAFSVALLLAA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AVYLPVRSLAWRKLSGQARPDEAELFRSVIDIALRPSGEQRAERWRKLMRDVFGPLEIKA HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE VEAGGAKVRVEDEGTLMLLPAAADSPPLSLRYRNGGRALYSPKDVALATQIVKLMRYAEE EECCCCEEEEECCCEEEEEECCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHH NRNAYDRGVSEERARIARDIHDNIGAQLLRALHSRESGRKDAMIRETLTDIRDVINNAQG CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC AEAPMEDVLADLRAETADRLEPHGVMLSWNLHAAPGALLSRQKVHALRALIREAVSNTIK CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HAEARSVEVTIRLDADWLSLKVTDDGKGMPAQTASLGNGLGNMKLRVESFGGDISLEGGE HCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCEEEEECCC GTCLAARIPVFEMAAE CEEEEEECCHHHHCCC >Mature Secondary Structure ADGRDTQGGCAPLFGGWTGAGAWGAGRGAQQFTSGAGQHQIVSVGMGKRAGMKLQDMNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEECCCC PLVRFAVPALIVVAVTAGMAVWGLQPASGWTGEVSAWRSPFAVHPGLWVSLLVGFGACLV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEECCHHHHHHHHHHHHHHH STWVWALKPADPAAILFAVSGLTTLMFSVSSTVWLFAMVLPDSAYMTAAIINCIGASGFG HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH IVMMCLFLIYPVKLPYWRWLMAATVLGFGAVTYWVMFGPSPDFMLVHPITFWEMVGIFVL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCHHHHHHHHHHHH VGWQIFATRGDPAQRSIALWLGAAVVLGAGGFISTVAFPHTFGFLPLLNENIAFGFFLLI HHHEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHHHH YAALTVGLMRFRVFGLGGWAFQLMFHFLAALGVLALDLALIGMLSFEPGAAFSVALLLAA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH AVYLPVRSLAWRKLSGQARPDEAELFRSVIDIALRPSGEQRAERWRKLMRDVFGPLEIKA HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE VEAGGAKVRVEDEGTLMLLPAAADSPPLSLRYRNGGRALYSPKDVALATQIVKLMRYAEE EECCCCEEEEECCCEEEEEECCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHHHHHHH NRNAYDRGVSEERARIARDIHDNIGAQLLRALHSRESGRKDAMIRETLTDIRDVINNAQG CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC AEAPMEDVLADLRAETADRLEPHGVMLSWNLHAAPGALLSRQKVHALRALIREAVSNTIK CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH HAEARSVEVTIRLDADWLSLKVTDDGKGMPAQTASLGNGLGNMKLRVESFGGDISLEGGE HCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCEEEEECCC GTCLAARIPVFEMAAE CEEEEEECCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]