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The map label for this gene is sdhD [H]

Identifier: 114799518

GI number: 114799518

Start: 3412923

End: 3413312

Strand: Direct

Name: sdhD [H]

Synonym: HNE_3244

Alternate gene names: 114799518

Gene position: 3412923-3413312 (Clockwise)

Preceding gene: 114798487

Following gene: 114798098

Centisome position: 92.12

GC content: 63.85

Gene sequence:

>390_bases
ATGTCTGAAGGCCAATACGTCACCCCCACCAAGGCCGCACGGGGCCTGGGCTCTGCCAAGTCCGGCACGCAGCACCACAT
CCGCCTGCGCGTCACCGCCATCGCCCTGGCATTCCTGGTGCCCTGGTGCCTCTACGCCGTCATCAAGGCGTCGGGCGCAG
GCTATGAAGGCGCGCTCGCCTGGGTCGGCCAGCCGATCAACGCCACCCTGCTGATCCTGACAGCCGCTGCGGTATCTTAT
CACATGCGCCTCGGCATGCAGGTTATCATCGAAGACTACATCGCCAAGACCGCCACGCGCACTACCCTCCTGATCCTGAA
CACCTTTGCCGCCTATGCGATGTTCATCGCCGTCGCCATGGCCGTGGTTCAGATCTGGACGGCACGCTGA

Upstream 100 bases:

>100_bases
CCGAAAGTCGCCAGCCAGGTTTCCACATTCATCTACGTCCTCGCGATCCTCAGCGCCGCTGCGCTGATGTTCGCCGCTGG
CGCGGTCTGAGGAGAGTTCC

Downstream 100 bases:

>100_bases
GACACGCGAAGAAGAGATAAAAGAATATGAGCAGCTATAACTGGATTGATCATACCTACGACGTGGTCGTGGTCGGCGCC
GGCGGCTCCGGTCTCCGCGC

Product: succinate dehydrogenase, hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSEGQYVTPTKAARGLGSAKSGTQHHIRLRVTAIALAFLVPWCLYAVIKASGAGYEGALAWVGQPINATLLILTAAAVSY
HMRLGMQVIIEDYIAKTATRTTLLILNTFAAYAMFIAVAMAVVQIWTAR

Sequences:

>Translated_129_residues
MSEGQYVTPTKAARGLGSAKSGTQHHIRLRVTAIALAFLVPWCLYAVIKASGAGYEGALAWVGQPINATLLILTAAAVSY
HMRLGMQVIIEDYIAKTATRTTLLILNTFAAYAMFIAVAMAVVQIWTAR
>Mature_128_residues
SEGQYVTPTKAARGLGSAKSGTQHHIRLRVTAIALAFLVPWCLYAVIKASGAGYEGALAWVGQPINATLLILTAAAVSYH
MRLGMQVIIEDYIAKTATRTTLLILNTFAAYAMFIAVAMAVVQIWTAR

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13856; Mature: 13724

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGQYVTPTKAARGLGSAKSGTQHHIRLRVTAIALAFLVPWCLYAVIKASGAGYEGALA
CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
WVGQPINATLLILTAAAVSYHMRLGMQVIIEDYIAKTATRTTLLILNTFAAYAMFIAVAM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVQIWTAR
HHHHHHCCC
>Mature Secondary Structure 
SEGQYVTPTKAARGLGSAKSGTQHHIRLRVTAIALAFLVPWCLYAVIKASGAGYEGALA
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
WVGQPINATLLILTAAAVSYHMRLGMQVIIEDYIAKTATRTTLLILNTFAAYAMFIAVAM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVQIWTAR
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA