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The map label for this gene is sdhC [H]

Identifier: 114798487

GI number: 114798487

Start: 3412514

End: 3412912

Strand: Direct

Name: sdhC [H]

Synonym: HNE_3243

Alternate gene names: 114798487

Gene position: 3412514-3412912 (Clockwise)

Preceding gene: 114798145

Following gene: 114799518

Centisome position: 92.11

GC content: 64.91

Gene sequence:

>399_bases
ATGTCCGGAACGAAGCGCGCCGCCACGCGCCCCTTGTCCCCGCATATCCAGATCTGGCGGTGGCACATCAGTGCCCTCGC
CTCGATCACCCACCGGATCACTGGGGGTGCCCTGTATGTCGGAACCTTCCTGATCGCCGCCTGGCTCGTCGCCCTGGCGA
TCAGCCCGGACGCCTACGCCGCGATGGAAGGCATCATCACCTCCATCCCCGGCAAGATCGTCCTCTTCCTCTGGGCGGTC
GCGACCCTTTTCCACCTGTATAACGGCATCCGCCACCTGATCTGGGACGGCCCCGGCATCGGCTTTTCGCCGAAAGTCGC
CAGCCAGGTTTCCACATTCATCTACGTCCTCGCGATCCTCAGCGCCGCTGCGCTGATGTTCGCCGCTGGCGCGGTCTGA

Upstream 100 bases:

>100_bases
CAGGTTTCAATTTGTCGCTCCCTCCAGGGCTTGCGTTGACACGACCCTAGAGGCTCGTAGAAGCGGTTGCCAGCATCCCA
TTGCACGCGAGGAAACCTCA

Downstream 100 bases:

>100_bases
GGAGAGTTCCATGTCTGAAGGCCAATACGTCACCCCCACCAAGGCCGCACGGGGCCTGGGCTCTGCCAAGTCCGGCACGC
AGCACCACATCCGCCTGCGC

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYAAMEGIITSIPGKIVLFLWAV
ATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAILSAAALMFAAGAV

Sequences:

>Translated_132_residues
MSGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYAAMEGIITSIPGKIVLFLWAV
ATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAILSAAALMFAAGAV
>Mature_131_residues
SGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYAAMEGIITSIPGKIVLFLWAVA
TLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAILSAAALMFAAGAV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14101; Mature: 13970

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
AMEGIITSIPGKIVLFLWAVATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAIL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SAAALMFAAGAV
HHHHHHHHHCCC
>Mature Secondary Structure 
SGTKRAATRPLSPHIQIWRWHISALASITHRITGGALYVGTFLIAAWLVALAISPDAYA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
AMEGIITSIPGKIVLFLWAVATLFHLYNGIRHLIWDGPGIGFSPKVASQVSTFIYVLAIL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SAAALMFAAGAV
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA