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The map label for this gene is rfbC [C]

Identifier: 114799033

GI number: 114799033

Start: 791573

End: 792154

Strand: Direct

Name: rfbC [C]

Synonym: HNE_0779

Alternate gene names: 114799033

Gene position: 791573-792154 (Clockwise)

Preceding gene: 114800082

Following gene: 114798649

Centisome position: 21.36

GC content: 54.3

Gene sequence:

>582_bases
TTGATTGTGACATCCGACGATGCACTTCCCGAAGTGCTCCATGTGCTGCCGGCCCGCCATACTGACGGGCGCGGCTGGTT
CAGCGAGACCTATAACCGGTCTGCGTTCTTCGCAGCTGGTATCGATTTTGAGTTCGTTCAGGACAACCAGTCGAGGTCCG
AGAAGGCCGGAACGGTTAGGGGACTTCATTTTCAAAAGCCGCCCCACGAACAGGTCAAGCTTGTGCGCTGTTTGCAGGGC
CGGATCCTGGATCTTGTTGTAGACATCAGGCCCGGATCTCCGAGATTCGGGAAGTTCACCGCGGTAGAACTTTCTGCAAT
TAATGGCCGGCAACTGCTGATACCGGCTGGCTTTGCACACGGGTTTTGCTCGCTCGATGATGGCTGTGAGATATACTATA
AAGTATCGGCCCATTATGCGCCGCAAAGTGATGCCGGAGTTGCATTTGACGATCCGGAAATCGGCATTCACTGGCCATTT
CCAACGGACTCCCTCATCTTGTCTGATAAAGACCGGAGGCTGCCTGCACTTAAAGATTGTTCAGATTTGGTCTGGCCAGC
TGCCGTGGGCCTGAACCGATGA

Upstream 100 bases:

>100_bases
ATGTCGACCAGCCGCGCAATCTGGCCAAATCGGTGACGGTGGAATAGGGCTCGCTCCGCATTGAAGGCTTGCTGCGCTAT
GATATAGCGCAGCAATGACC

Downstream 100 bases:

>100_bases
CAGCTCGCTCCGGGCCAATTCTTGTCATCGGCAGCAGCGGGCAGCTGGCCCAAAGCCTGCGCGCAATGGGCCGCGAGGAT
GTGGTGTGTGTGGGCCGGCC

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MIVTSDDALPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVRGLHFQKPPHEQVKLVRCLQG
RILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAHGFCSLDDGCEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPF
PTDSLILSDKDRRLPALKDCSDLVWPAAVGLNR

Sequences:

>Translated_193_residues
MIVTSDDALPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVRGLHFQKPPHEQVKLVRCLQG
RILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAHGFCSLDDGCEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPF
PTDSLILSDKDRRLPALKDCSDLVWPAAVGLNR
>Mature_193_residues
MIVTSDDALPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVRGLHFQKPPHEQVKLVRCLQG
RILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAHGFCSLDDGCEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPF
PTDSLILSDKDRRLPALKDCSDLVWPAAVGLNR

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=172, Percent_Identity=49.4186046511628, Blast_Score=154, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI17550412, Length=175, Percent_Identity=38.8571428571429, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 21391; Mature: 21391

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTSDDALPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVR
CEEECCCCHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCEEEEECCCCCCHHHCCCEE
GLHFQKPPHEQVKLVRCLQGRILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAH
CCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCC
GFCSLDDGCEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPFPTDSLILSDKDRRLPALKDC
CCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEECCCCCCCEEECCCCCCCCCHHHH
SDLVWPAAVGLNR
HHHHHHHHHCCCC
>Mature Secondary Structure
MIVTSDDALPEVLHVLPARHTDGRGWFSETYNRSAFFAAGIDFEFVQDNQSRSEKAGTVR
CEEECCCCHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCEEEEECCCCCCHHHCCCEE
GLHFQKPPHEQVKLVRCLQGRILDLVVDIRPGSPRFGKFTAVELSAINGRQLLIPAGFAH
CCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCC
GFCSLDDGCEIYYKVSAHYAPQSDAGVAFDDPEIGIHWPFPTDSLILSDKDRRLPALKDC
CCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEECCCCCCCEEECCCCCCCCCHHHH
SDLVWPAAVGLNR
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]