| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is ydiI [C]
Identifier: 114798214
GI number: 114798214
Start: 2423535
End: 2423936
Strand: Reverse
Name: ydiI [C]
Synonym: HNE_2324
Alternate gene names: 114798214
Gene position: 2423936-2423535 (Counterclockwise)
Preceding gene: 114797938
Following gene: 114797462
Centisome position: 65.42
GC content: 63.18
Gene sequence:
>402_bases ATGAGCGACGCAGCCCTGAAGGCGATGGAAGCTTCGATGCCCTTTGCGAAAGCCATCGGGCTGACGCTGACACGTGCGGA CAAGGAGGCGGTTATCGGACAGGTGACCGTGGGGCCCGAGCACTGCACGGCGGGCGGGATTGCGCATGGCGGGTTCCTGA TGACGCTGGCCGATTGCGTGGGGGCGATCGGGGCGTTTCTGAGCCTGCCGGCTGAGTCCAAAATGACGACGACGACCGAG AGCAAGACGAACCTGATCTCAGGCGCGCCGGTGGGGACGGTTCTGAGAGCAACTGCCGCACCTGTAAGTGTTGGCCGCAG GCTTCAGGTCTGGCAGACGCGCATCGAAACGGAGGCGGGCAAGCTGGTCGCGTTGACCACCCAGTCTCAGATGAACCTTT AA
Upstream 100 bases:
>100_bases GACGAGGCGCGTCACTGGCTGGACAGATCAGGACAGTTCCGGGACACTTTGGGACAGTTCGGGACAAACCAGGACACTTT CGGACACGCAGGAGACACCT
Downstream 100 bases:
>100_bases GAAGGAACGCGCATGAAACTCGACGGTCTCAAAGTTCTCGATCTCTCGGCGTTTTTGCCGGGGCCGCATATGACGATGAT GATGGCCGACCATGGCGCGG
Product: thioesterase family protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation-Like Protein; Phenylacetic Acid Degradation-Related Protein; Aromatic Compounds Degradation Protein PaaI; Thioesterase Family Protein
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MSDAALKAMEASMPFAKAIGLTLTRADKEAVIGQVTVGPEHCTAGGIAHGGFLMTLADCVGAIGAFLSLPAESKMTTTTE SKTNLISGAPVGTVLRATAAPVSVGRRLQVWQTRIETEAGKLVALTTQSQMNL
Sequences:
>Translated_133_residues MSDAALKAMEASMPFAKAIGLTLTRADKEAVIGQVTVGPEHCTAGGIAHGGFLMTLADCVGAIGAFLSLPAESKMTTTTE SKTNLISGAPVGTVLRATAAPVSVGRRLQVWQTRIETEAGKLVALTTQSQMNL >Mature_132_residues SDAALKAMEASMPFAKAIGLTLTRADKEAVIGQVTVGPEHCTAGGIAHGGFLMTLADCVGAIGAFLSLPAESKMTTTTES KTNLISGAPVGTVLRATAAPVSVGRRLQVWQTRIETEAGKLVALTTQSQMNL
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13686; Mature: 13555
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAALKAMEASMPFAKAIGLTLTRADKEAVIGQVTVGPEHCTAGGIAHGGFLMTLADCV CCCHHHHHHHHCCCHHHHHCEEEECCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHH GAIGAFLSLPAESKMTTTTESKTNLISGAPVGTVLRATAAPVSVGRRLQVWQTRIETEAG HHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHCCCC KLVALTTQSQMNL CEEEEECCCCCCC >Mature Secondary Structure SDAALKAMEASMPFAKAIGLTLTRADKEAVIGQVTVGPEHCTAGGIAHGGFLMTLADCV CCHHHHHHHHCCCHHHHHCEEEECCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHH GAIGAFLSLPAESKMTTTTESKTNLISGAPVGTVLRATAAPVSVGRRLQVWQTRIETEAG HHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHCCCC KLVALTTQSQMNL CEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA