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The map label for this gene is yeaM [H]

Identifier: 114797938

GI number: 114797938

Start: 2425571

End: 2426353

Strand: Reverse

Name: yeaM [H]

Synonym: HNE_2326

Alternate gene names: 114797938

Gene position: 2426353-2425571 (Counterclockwise)

Preceding gene: 114798869

Following gene: 114798214

Centisome position: 65.49

GC content: 61.3

Gene sequence:

>783_bases
GTGTTACACAAGTCCCGAGAGGACAGGATGAAAAGCACTCACCAACTCGATTTGAGCCGCCGCCCCGTGGTCGCCCTGGC
GGATGAATACCCGTCCGGCTTTGTGGATACGGCGCATTCGCATGAGCGCATCCAGCTGCTTTATGCGTGTTCCGGCGTGA
TGTCGGTGGTGACCGACAAGACGAGCTTTGTGATACCGCCGCAGCGCGCAGTGTGGATTCCCAGCCAGGTTCAGCATGAA
GTTTCCTGCCGGGGGCCGGTATCGCTGCGCACGCTCTACATTGATCCGAGATATGAGCGGGATGATCCGGACTGTCATAT
CGTCGAGGTGGGACAGCTGCTCCGGGCGCTGATCCTTGAGGTCACGCAGTTTGAGCATGATTATGACCTTCAGGGGCGCG
AGGGACAGATTGTCAGCTTGCTGGTGAGCGAGCTGCTAGCCTCGCCCAAGGTGCCTTATGCCGCGCCGATGCCGACCGAC
CCGCGGTTGGTGCGGGTGTGCCGGGAGATTATCGAACATCCGTCTGACCAGCGCGACATTGACCAGTGGGCCGATATTGC
GGGCATGAGCCGGCGCAGCTTTACGCGGGCGTTCAAGCGGGAGACCGGCATGGGCGTGGCGCTGTGGCGTCAGCAGGTGC
GGCTGCTGGAGGCTTTGTCGCTGCTTTCCACCGGATCGAGCGTCACCAGCGTGGCTATGGATGTGGGCTATGACAGCGCC
AGCGCGTTCTGCGCGATGTTTCAGCGCGCGTTTGGGGTTTCGCCGAGCCGGTATTCTTTCTGA

Upstream 100 bases:

>100_bases
TTTTGGCCCACGGCATTCTAACAGGTCATATTTTTGCTGATTTGGGCCACTCGATCAGTCATGATCTTGTCACATGGGCG
GACGGTGGCATCATTTGCGG

Downstream 100 bases:

>100_bases
GGCCGGGCCTCAGCCGAGGCCGCCCATCAGCGTGTATTTGATGTCGAGATAATCGCTGACGCCATACTTTGAGCCTTCGC
GGCCGAAGCCGCTTTCCTTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLHKSREDRMKSTHQLDLSRRPVVALADEYPSGFVDTAHSHERIQLLYACSGVMSVVTDKTSFVIPPQRAVWIPSQVQHE
VSCRGPVSLRTLYIDPRYERDDPDCHIVEVGQLLRALILEVTQFEHDYDLQGREGQIVSLLVSELLASPKVPYAAPMPTD
PRLVRVCREIIEHPSDQRDIDQWADIAGMSRRSFTRAFKRETGMGVALWRQQVRLLEALSLLSTGSSVTSVAMDVGYDSA
SAFCAMFQRAFGVSPSRYSF

Sequences:

>Translated_260_residues
MLHKSREDRMKSTHQLDLSRRPVVALADEYPSGFVDTAHSHERIQLLYACSGVMSVVTDKTSFVIPPQRAVWIPSQVQHE
VSCRGPVSLRTLYIDPRYERDDPDCHIVEVGQLLRALILEVTQFEHDYDLQGREGQIVSLLVSELLASPKVPYAAPMPTD
PRLVRVCREIIEHPSDQRDIDQWADIAGMSRRSFTRAFKRETGMGVALWRQQVRLLEALSLLSTGSSVTSVAMDVGYDSA
SAFCAMFQRAFGVSPSRYSF
>Mature_260_residues
MLHKSREDRMKSTHQLDLSRRPVVALADEYPSGFVDTAHSHERIQLLYACSGVMSVVTDKTSFVIPPQRAVWIPSQVQHE
VSCRGPVSLRTLYIDPRYERDDPDCHIVEVGQLLRALILEVTQFEHDYDLQGREGQIVSLLVSELLASPKVPYAAPMPTD
PRLVRVCREIIEHPSDQRDIDQWADIAGMSRRSFTRAFKRETGMGVALWRQQVRLLEALSLLSTGSSVTSVAMDVGYDSA
SAFCAMFQRAFGVSPSRYSF

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=220, Percent_Identity=30.4545454545455, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29326; Mature: 29326

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHKSREDRMKSTHQLDLSRRPVVALADEYPSGFVDTAHSHERIQLLYACSGVMSVVTDK
CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
TSFVIPPQRAVWIPSQVQHEVSCRGPVSLRTLYIDPRYERDDPDCHIVEVGQLLRALILE
CCEEECCCCEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
VTQFEHDYDLQGREGQIVSLLVSELLASPKVPYAAPMPTDPRLVRVCREIIEHPSDQRDI
HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
DQWADIAGMSRRSFTRAFKRETGMGVALWRQQVRLLEALSLLSTGSSVTSVAMDVGYDSA
HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
SAFCAMFQRAFGVSPSRYSF
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLHKSREDRMKSTHQLDLSRRPVVALADEYPSGFVDTAHSHERIQLLYACSGVMSVVTDK
CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
TSFVIPPQRAVWIPSQVQHEVSCRGPVSLRTLYIDPRYERDDPDCHIVEVGQLLRALILE
CCEEECCCCEEECCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
VTQFEHDYDLQGREGQIVSLLVSELLASPKVPYAAPMPTDPRLVRVCREIIEHPSDQRDI
HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
DQWADIAGMSRRSFTRAFKRETGMGVALWRQQVRLLEALSLLSTGSSVTSVAMDVGYDSA
HHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
SAFCAMFQRAFGVSPSRYSF
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]