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The map label for this gene is yfdE [H]

Identifier: 114797462

GI number: 114797462

Start: 2422353

End: 2423522

Strand: Reverse

Name: yfdE [H]

Synonym: HNE_2323

Alternate gene names: 114797462

Gene position: 2423522-2422353 (Counterclockwise)

Preceding gene: 114798214

Following gene: 114799493

Centisome position: 65.41

GC content: 63.33

Gene sequence:

>1170_bases
ATGAAACTCGACGGTCTCAAAGTTCTCGATCTCTCGGCGTTTTTGCCGGGGCCGCATATGACGATGATGATGGCCGACCA
TGGCGCGGACGTGATCATGGTGGAGCCGGCCAATGGGCTGGGCGAGCCGGTGCGGGAGATCGGCGAGACGACGCCGGACG
GCAATACGGTGTGGTTCCGCAATGTGGCGCGGGGCAAGCGGAGCCTGAAACTGAACCTGAAAGACCCAGCCGGTGTCGAG
CTGCTGCTGAAGCTGGCCGAGCAGGCGGATGTGTTTGTCGAGGCGTTCCGGCCGGGCGTGGTGAAGCGGCTGGGCGTTGG
CTATGAGGCAGTTTCGGCGCGCAACCCCAAGATCGTTTACTGCTCGATTTCCGCCTTCGGGCAGACCGGGCAGCATGTGC
AGAAGCCCGCGCATGACCTCGTGGTGCAGGCGATGACGGGGCTGATGGATCTGGGGCGGGGCCTCAGCGATGGGCAGCCG
GCGCCCCCGCCCGTGCCGTTTGCCGATGCGTCGGCCTCGCTGATGGCGCTGTCTGCGATCCTGATGGCGCTTTACCGGCG
CACGCAGACGGGCGAGGGCGATTATATCGACATGTCGATGTATGACGCGGCGATTGCCTGGACGCCGAATGTGCTGGGGC
CGGTGTTTGGCAAGGGCGAGGCGCCGAAGCCGAAACAGATGCGCAGCTTTGGCGGCGCGGCGATGAACTCGATCTACAGA
ACCTCCGATGACGGATTTGTCGTGATCGGCGGATCGGAAGTGAAGTTTGCGGAGAATCTGCTGACCGCTTTGGGGCGCGT
TGATCTGCTGCCCTATGCGAAGATACCGCCGGGGGATGAGCAGGAGCCACTGAAGGTCTATTTCCGCGAGACGTTTGCGA
GCGAGACGCTGGCCTATTGGGAGGCATTTCTTCAGCCGGTGGATTGCTGCTGGGCGGTGGTGCGTGATCTGAAAGCCGCG
TTTGATGATCCGTTCACGGCAGAGCGCGGGATGGTGTTCGCCGATGGCGACGGCAACCGGCATGTTGGCCCGCCGATCCG
CTTTGCGAAGGAGCCGCCGCAACCTAATCCGAAGCTGGCGGCCTATGGCGAGCATTCGGAGGAGATTGCGCGGGAGACGG
GGATGAGCGCGGAAGAAGCAGCGGCGCTGAAAGCGCGGGGGGTTATTTGA

Upstream 100 bases:

>100_bases
CCGCAGGCTTCAGGTCTGGCAGACGCGCATCGAAACGGAGGCGGGCAAGCTGGTCGCGTTGACCACCCAGTCTCAGATGA
ACCTTTAAGAAGGAACGCGC

Downstream 100 bases:

>100_bases
TCTGATCTGGATGCGCTGTGCTATCGAACGGCTCATCCTGAGCGTCCTTCGTCTGGCTCAGGAGGAGCGTCGAAGGACGA
GCCGGGGCTAGCGCTGTGCT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKLDGLKVLDLSAFLPGPHMTMMMADHGADVIMVEPANGLGEPVREIGETTPDGNTVWFRNVARGKRSLKLNLKDPAGVE
LLLKLAEQADVFVEAFRPGVVKRLGVGYEAVSARNPKIVYCSISAFGQTGQHVQKPAHDLVVQAMTGLMDLGRGLSDGQP
APPPVPFADASASLMALSAILMALYRRTQTGEGDYIDMSMYDAAIAWTPNVLGPVFGKGEAPKPKQMRSFGGAAMNSIYR
TSDDGFVVIGGSEVKFAENLLTALGRVDLLPYAKIPPGDEQEPLKVYFRETFASETLAYWEAFLQPVDCCWAVVRDLKAA
FDDPFTAERGMVFADGDGNRHVGPPIRFAKEPPQPNPKLAAYGEHSEEIARETGMSAEEAAALKARGVI

Sequences:

>Translated_389_residues
MKLDGLKVLDLSAFLPGPHMTMMMADHGADVIMVEPANGLGEPVREIGETTPDGNTVWFRNVARGKRSLKLNLKDPAGVE
LLLKLAEQADVFVEAFRPGVVKRLGVGYEAVSARNPKIVYCSISAFGQTGQHVQKPAHDLVVQAMTGLMDLGRGLSDGQP
APPPVPFADASASLMALSAILMALYRRTQTGEGDYIDMSMYDAAIAWTPNVLGPVFGKGEAPKPKQMRSFGGAAMNSIYR
TSDDGFVVIGGSEVKFAENLLTALGRVDLLPYAKIPPGDEQEPLKVYFRETFASETLAYWEAFLQPVDCCWAVVRDLKAA
FDDPFTAERGMVFADGDGNRHVGPPIRFAKEPPQPNPKLAAYGEHSEEIARETGMSAEEAAALKARGVI
>Mature_389_residues
MKLDGLKVLDLSAFLPGPHMTMMMADHGADVIMVEPANGLGEPVREIGETTPDGNTVWFRNVARGKRSLKLNLKDPAGVE
LLLKLAEQADVFVEAFRPGVVKRLGVGYEAVSARNPKIVYCSISAFGQTGQHVQKPAHDLVVQAMTGLMDLGRGLSDGQP
APPPVPFADASASLMALSAILMALYRRTQTGEGDYIDMSMYDAAIAWTPNVLGPVFGKGEAPKPKQMRSFGGAAMNSIYR
TSDDGFVVIGGSEVKFAENLLTALGRVDLLPYAKIPPGDEQEPLKVYFRETFASETLAYWEAFLQPVDCCWAVVRDLKAA
FDDPFTAERGMVFADGDGNRHVGPPIRFAKEPPQPNPKLAAYGEHSEEIARETGMSAEEAAALKARGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=32.6633165829146, Blast_Score=178, Evalue=7e-45,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=32.6633165829146, Blast_Score=178, Evalue=8e-45,
Organism=Homo sapiens, GI300863128, Length=388, Percent_Identity=31.1855670103093, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI300863124, Length=340, Percent_Identity=31.7647058823529, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI266458393, Length=301, Percent_Identity=35.2159468438538, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI266458397, Length=268, Percent_Identity=35.4477611940299, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI300863126, Length=149, Percent_Identity=41.6107382550336, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI13376042, Length=340, Percent_Identity=27.9411764705882, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=35.3741496598639, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=36.0544217687075, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=379, Percent_Identity=30.0791556728232, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788717, Length=425, Percent_Identity=27.5294117647059, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=25.9803921568627, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=320, Percent_Identity=29.6875, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI115535051, Length=319, Percent_Identity=27.2727272727273, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24648431, Length=404, Percent_Identity=29.9504950495049, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24585488, Length=337, Percent_Identity=27.299703264095, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41982; Mature: 41982

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDGLKVLDLSAFLPGPHMTMMMADHGADVIMVEPANGLGEPVREIGETTPDGNTVWFR
CCCCCEEEEEHHHHCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCEEEEH
NVARGKRSLKLNLKDPAGVELLLKLAEQADVFVEAFRPGVVKRLGVGYEAVSARNPKIVY
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCEEEE
CSISAFGQTGQHVQKPAHDLVVQAMTGLMDLGRGLSDGQPAPPPVPFADASASLMALSAI
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LMALYRRTQTGEGDYIDMSMYDAAIAWTPNVLGPVFGKGEAPKPKQMRSFGGAAMNSIYR
HHHHHHHCCCCCCCEEEHHHHCEEEEECCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHEE
TSDDGFVVIGGSEVKFAENLLTALGRVDLLPYAKIPPGDEQEPLKVYFRETFASETLAYW
ECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EAFLQPVDCCWAVVRDLKAAFDDPFTAERGMVFADGDGNRHVGPPIRFAKEPPQPNPKLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
AYGEHSEEIARETGMSAEEAAALKARGVI
ECCCCHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKLDGLKVLDLSAFLPGPHMTMMMADHGADVIMVEPANGLGEPVREIGETTPDGNTVWFR
CCCCCEEEEEHHHHCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCEEEEH
NVARGKRSLKLNLKDPAGVELLLKLAEQADVFVEAFRPGVVKRLGVGYEAVSARNPKIVY
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCCCEEEE
CSISAFGQTGQHVQKPAHDLVVQAMTGLMDLGRGLSDGQPAPPPVPFADASASLMALSAI
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LMALYRRTQTGEGDYIDMSMYDAAIAWTPNVLGPVFGKGEAPKPKQMRSFGGAAMNSIYR
HHHHHHHCCCCCCCEEEHHHHCEEEEECCCHHCCCCCCCCCCCHHHHHHHCCHHHHHHEE
TSDDGFVVIGGSEVKFAENLLTALGRVDLLPYAKIPPGDEQEPLKVYFRETFASETLAYW
ECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
EAFLQPVDCCWAVVRDLKAAFDDPFTAERGMVFADGDGNRHVGPPIRFAKEPPQPNPKLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
AYGEHSEEIARETGMSAEEAAALKARGVI
ECCCCHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]