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The map label for this gene is ydfH [C]

Identifier: 114798158

GI number: 114798158

Start: 1285545

End: 1286258

Strand: Reverse

Name: ydfH [C]

Synonym: HNE_1259

Alternate gene names: 114798158

Gene position: 1286258-1285545 (Counterclockwise)

Preceding gene: 114798509

Following gene: 114797899

Centisome position: 34.72

GC content: 63.31

Gene sequence:

>714_bases
ATGGGCGTACAAGGCAAGATAAAGCCCAGGGAAGACATGGTACCGTTTCACCAGCAGGGATTCAGCGACGTCCGCCACAC
CGAAGACTGGGCGCCCGACCTCCAGAAATCCAAAGCCTATGAGCAGATCCTGCTCGACATCATCCTCGGCATCCTGCCGC
CAAGCGCCCGCCTCGATGAGCTTGGCCTCGCCAAGCAGTATAATCTCGGCGTTGCAGGGGTGCGCGACGCGCTGGCCCGC
CTCTCGCTCGAAGGCATGGTCCTGCGCCGCCCGCGCTCGGGCACCATCGTTGCCTCCATTGATGTGCAGGAAGTGCAGCA
ATCCTATGAAGTGCGTTGCCTGCTGGAGCCTCAGGCGGCCTTCCTTGCCGCCCAACATGCAACCCGCGCCGAGATCGACG
AGATCATGACCGCCTTCGATGGCGCCGAGGCAGCCGCCAAGCGCCGCGACTTTCGCGCCATCATCGCCATGGACCAGAAA
TTCCACCGGGCCGTCGCCATCGCCAGCCACAATCTCAGCCTCGCGCGCATCGTCATCAACCTCCATAACAAAGCGGCGCG
CTACTGGTATTACTCCATGACCACGCGGCCCGACGAAGACCGCCTGGAGGACATCTCCAACCATCGCATCGCCGCCAAGG
CCATCGCCAAGGGCGACGGCCCGGCCGCGATGAAGGCCATGCTGGTCGTGATGGGCGACAAGAACGCCGACTGA

Upstream 100 bases:

>100_bases
CTGCCCGCAATCAGTCAATTTGCGGATGGGCTTGCCACAACCAATACGATAACAAAGCCTGCCAACATAAAAAATGCGCA
GGCACCAGGGAGCAAACAAC

Downstream 100 bases:

>100_bases
TCCCTCCACAATTCAGGCGCCGGAATGCCTCAAACGCTCAGCTTTGAGGCATTTTTTTATTTGATAGCCGTCCACTCCAG
TGAAGTTCTTTCGGCCGTGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Gntr Family; FCD Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator Protein AsnC/GntR Family; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Transcriptional Regulatory Protein; Regulatory Protein; Transcription Regulator Protein; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MGVQGKIKPREDMVPFHQQGFSDVRHTEDWAPDLQKSKAYEQILLDIILGILPPSARLDELGLAKQYNLGVAGVRDALAR
LSLEGMVLRRPRSGTIVASIDVQEVQQSYEVRCLLEPQAAFLAAQHATRAEIDEIMTAFDGAEAAAKRRDFRAIIAMDQK
FHRAVAIASHNLSLARIVINLHNKAARYWYYSMTTRPDEDRLEDISNHRIAAKAIAKGDGPAAMKAMLVVMGDKNAD

Sequences:

>Translated_237_residues
MGVQGKIKPREDMVPFHQQGFSDVRHTEDWAPDLQKSKAYEQILLDIILGILPPSARLDELGLAKQYNLGVAGVRDALAR
LSLEGMVLRRPRSGTIVASIDVQEVQQSYEVRCLLEPQAAFLAAQHATRAEIDEIMTAFDGAEAAAKRRDFRAIIAMDQK
FHRAVAIASHNLSLARIVINLHNKAARYWYYSMTTRPDEDRLEDISNHRIAAKAIAKGDGPAAMKAMLVVMGDKNAD
>Mature_236_residues
GVQGKIKPREDMVPFHQQGFSDVRHTEDWAPDLQKSKAYEQILLDIILGILPPSARLDELGLAKQYNLGVAGVRDALARL
SLEGMVLRRPRSGTIVASIDVQEVQQSYEVRCLLEPQAAFLAAQHATRAEIDEIMTAFDGAEAAAKRRDFRAIIAMDQKF
HRAVAIASHNLSLARIVINLHNKAARYWYYSMTTRPDEDRLEDISNHRIAAKAIAKGDGPAAMKAMLVVMGDKNAD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26331; Mature: 26199

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVQGKIKPREDMVPFHQQGFSDVRHTEDWAPDLQKSKAYEQILLDIILGILPPSARLDE
CCCCCCCCCHHCCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
LGLAKQYNLGVAGVRDALARLSLEGMVLRRPRSGTIVASIDVQEVQQSYEVRCLLEPQAA
HCCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEECCHHHHHHCCCEEEEECCHHH
FLAAQHATRAEIDEIMTAFDGAEAAAKRRDFRAIIAMDQKFHRAVAIASHNLSLARIVIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHEEH
LHNKAARYWYYSMTTRPDEDRLEDISNHRIAAKAIAKGDGPAAMKAMLVVMGDKNAD
HCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHEEEEEECCCCCC
>Mature Secondary Structure 
GVQGKIKPREDMVPFHQQGFSDVRHTEDWAPDLQKSKAYEQILLDIILGILPPSARLDE
CCCCCCCCHHCCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
LGLAKQYNLGVAGVRDALARLSLEGMVLRRPRSGTIVASIDVQEVQQSYEVRCLLEPQAA
HCCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCEEEECCHHHHHHCCCEEEEECCHHH
FLAAQHATRAEIDEIMTAFDGAEAAAKRRDFRAIIAMDQKFHRAVAIASHNLSLARIVIN
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHEEH
LHNKAARYWYYSMTTRPDEDRLEDISNHRIAAKAIAKGDGPAAMKAMLVVMGDKNAD
HCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA