Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is 114797899

Identifier: 114797899

GI number: 114797899

Start: 1282784

End: 1285177

Strand: Reverse

Name: 114797899

Synonym: HNE_1258

Alternate gene names: NA

Gene position: 1285177-1282784 (Counterclockwise)

Preceding gene: 114798158

Following gene: 114800521

Centisome position: 34.69

GC content: 60.03

Gene sequence:

>2394_bases
ATGCGAGCACTGTATTACCTGACAAGCGTTTTGACAGCCATTGCCCTTGCCAACAGTGCCTGGGCACAAGAGGGATCTGC
TCCGGCCACGGAAGAGGTGGCGGACGATACCGCCGTGCTCGACACCGTGGTCGTGGTGAGCGACCGCGTCGGCCTTCTGG
AGAAGTCGTCGAGCGAAAGCGTGTTCGGCATGGGCAAATCCCTGCTCGAAACGCCGCGATCCGCCACTCTGGTCAGCGAC
CTGACCCTTGAGCGCTACGGCATTGAGGAAGTCGATGACCTGATCGCCATCGCGCCCGGCACATTCACCGGCAGCTATTA
CGGCGTTAAAGGCGCCGTCAACGCACGCGGCACGCTGGCCGAGAGCTACTTCAACGGCTTTAAACGTGTTGAAAACCGCG
GCACCTACCCCACACTCCTCGGTGCGGCATCCCAGGTTGACATCGTCCGTGGTCCCCCGACACCGGCCTTCGGCCCCGGC
AAGGTGGGCGGTCTTATCAACGTGATCCCGAAAACAGGCCGCGCCAATGGCAGCGATGAAATGGCCGGTCAGGCCGAAGT
CACCGTCGGCTCTTATGGCAAGTTCAATGCGAACGGCCAGGTCGGCGTTCCCGTCGGCGACCGCGGCGGTGTCTACGGAT
ATGTCGAGTACGAAAACTCGGACTCGTTCTATCGCGGCGTCTCCCCGGAACACCTGATGATCCAGCTGTCTGGCGAGTAT
GATCTCACCGACACGCTCACCCTCACGATGAGCGGCCAGTATTTCGACTCCGATGGCTATGTCCAGTCCCCCGGCTGGAA
CCGCGTCACCCAGGACCTGATCGACAACCAGAACTACATCACCGGCCGCAACACTGCTGTGGTGGATACGGATGGAAATG
GCCGCATCACCCCCGGCGAAGCAGGCGGCAGTTTCGTCGTCGGCTATTTCGGCTTCCCGCCCCCTGTCGATCCGCGCTTC
CAGCTGACCGAAGGCGTCGGCACGGCAAAACTCGACGCCCGCACGATCTTCATCTCGGATGCAGACTTTTCCAAATCGAC
CACCAACACCCTCTATTTCAAAGCCGAGCAACAGATTGGCGATGACACGCTGAATGTCGAGCTTTTCTATGACGACATGG
AAAACCAGCGCTTCGTCAGCTACGGCTTCCCGGCTGATTACGACGCCTGGGCCGGCGAAGGCCGCCTCAGCTATGACTTT
GACGCAGGCACTGAAGACTCCTTCATCCGGTCCACAAACAAGGTCGGCTTCGGCTATCGCCGTCAGGACGCGATCAAGAA
AGAGACCTATAACTCCGGCTACATCTCGCTGGACCGCCGCGACATCATCTTCGGCGCCACCCCTAACGACATCATCGATG
ATCCGTTCTCGGTAGAGCCAGGTATCGAGGGCGTCGGCTGGGACATGACGGTCGACTCAAGCTGGACCAACAAGGGCCTC
TTCGCCCTCTCCGACATCAGCATCGGTGAATATGCCAGCCTGCTGCTCGGCGGCCGTTACGACTGGTATGACGCGACCTC
CATCGATACCGGCGCGCTCTGCTATTGCCCGGCCAATATCGAGTTTGACGCCGCCCAGGAAGAATTCAGCTACAGCGCCA
GCTTCAGCCTGAATACGCCCTTCGGCCTCTTTCCTTATGTGACCTATGCTGAAACAGCCGCGCTCGAAATCGGCCAGGCC
GGCGACATCACGCCCGGCCTGATCAGCGGCGATCAATGGATCTCCGACTCAGAGCTGACCGAGGCAGGCGTAAAGTTTGA
ACTGCTCAGCGGTACGCTGGTCGGCAGCCTGTCCGGCTACGAACAATCTCGCACCCGCCTGTCGATGTTCGACAACGTCG
TTGCCACCGAAGCGAAGGGCATCGAACTGGAAGCCCGCTGGCTTGCCACCGACAACCTCTCCTTCACCTTCGCCGGAAAC
ACCCAGGAAACGACCGTCAAAGGCCCCGATGCCAGCTTCGGCTACATCCCCGTCTGGGCAACCGGCCTCGATCCGATCGA
CGGTTATGGCGCGGCCTATGCGGTCTACAACCTCGCCACCTCGCCCGTGGGCCAGCCTGGCGACTATGAATTCCGCCTCG
TGCCACAAACCGTGGCCAGCGTCTTCGGCTCCTATGTTTCCGACCCCTATGAATGGGGCCAGTTCGGGGTCACCGGTGGC
ATCACCAGTGTCTCGGAAACCGCCGGCAAACTCGCCAATCCGGTGATCCTGCCCGCCTATGAAACCGTCAATCTGTCGGC
CTTCTACACCTTCAACGACTATGAAATCGCCTTCAACGTCGACAACCTGTTTGATGAGCTCTACTTCCAGCCGGTAACCG
ACACATATTCCGATATGGCGGTCCTGCCGGGCCGTGGCACGGAATACCGCGTCACCTTCAAGAAGAAGTTCTGA

Upstream 100 bases:

>100_bases
GAAATGTTAGTTCAAATATCAGAACGCGCTGTTTTTCGGGCGATGCCTCCCTGAACTGACCTCATACGCAACACGCCGCA
GCCTATGAGGGGTCCAAGAC

Downstream 100 bases:

>100_bases
GAACGGATATAAGCTCCCGCCGGGGACCGGTTCTGCTGCCTACCCAACGCCCTCCCGCTGGGCTTGCAGGACCGGTCCTT
GGCAGAGGAGACACTATGGG

Product: putative TonB-dependent receptor

Products: NA

Alternate protein names: NB Dependent Receptor; NB-Dependent Receptor Plug; Outer Membrane Protein; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein; Nb-Dependent Receptor Plug

Number of amino acids: Translated: 797; Mature: 797

Protein sequence:

>797_residues
MRALYYLTSVLTAIALANSAWAQEGSAPATEEVADDTAVLDTVVVVSDRVGLLEKSSSESVFGMGKSLLETPRSATLVSD
LTLERYGIEEVDDLIAIAPGTFTGSYYGVKGAVNARGTLAESYFNGFKRVENRGTYPTLLGAASQVDIVRGPPTPAFGPG
KVGGLINVIPKTGRANGSDEMAGQAEVTVGSYGKFNANGQVGVPVGDRGGVYGYVEYENSDSFYRGVSPEHLMIQLSGEY
DLTDTLTLTMSGQYFDSDGYVQSPGWNRVTQDLIDNQNYITGRNTAVVDTDGNGRITPGEAGGSFVVGYFGFPPPVDPRF
QLTEGVGTAKLDARTIFISDADFSKSTTNTLYFKAEQQIGDDTLNVELFYDDMENQRFVSYGFPADYDAWAGEGRLSYDF
DAGTEDSFIRSTNKVGFGYRRQDAIKKETYNSGYISLDRRDIIFGATPNDIIDDPFSVEPGIEGVGWDMTVDSSWTNKGL
FALSDISIGEYASLLLGGRYDWYDATSIDTGALCYCPANIEFDAAQEEFSYSASFSLNTPFGLFPYVTYAETAALEIGQA
GDITPGLISGDQWISDSELTEAGVKFELLSGTLVGSLSGYEQSRTRLSMFDNVVATEAKGIELEARWLATDNLSFTFAGN
TQETTVKGPDASFGYIPVWATGLDPIDGYGAAYAVYNLATSPVGQPGDYEFRLVPQTVASVFGSYVSDPYEWGQFGVTGG
ITSVSETAGKLANPVILPAYETVNLSAFYTFNDYEIAFNVDNLFDELYFQPVTDTYSDMAVLPGRGTEYRVTFKKKF

Sequences:

>Translated_797_residues
MRALYYLTSVLTAIALANSAWAQEGSAPATEEVADDTAVLDTVVVVSDRVGLLEKSSSESVFGMGKSLLETPRSATLVSD
LTLERYGIEEVDDLIAIAPGTFTGSYYGVKGAVNARGTLAESYFNGFKRVENRGTYPTLLGAASQVDIVRGPPTPAFGPG
KVGGLINVIPKTGRANGSDEMAGQAEVTVGSYGKFNANGQVGVPVGDRGGVYGYVEYENSDSFYRGVSPEHLMIQLSGEY
DLTDTLTLTMSGQYFDSDGYVQSPGWNRVTQDLIDNQNYITGRNTAVVDTDGNGRITPGEAGGSFVVGYFGFPPPVDPRF
QLTEGVGTAKLDARTIFISDADFSKSTTNTLYFKAEQQIGDDTLNVELFYDDMENQRFVSYGFPADYDAWAGEGRLSYDF
DAGTEDSFIRSTNKVGFGYRRQDAIKKETYNSGYISLDRRDIIFGATPNDIIDDPFSVEPGIEGVGWDMTVDSSWTNKGL
FALSDISIGEYASLLLGGRYDWYDATSIDTGALCYCPANIEFDAAQEEFSYSASFSLNTPFGLFPYVTYAETAALEIGQA
GDITPGLISGDQWISDSELTEAGVKFELLSGTLVGSLSGYEQSRTRLSMFDNVVATEAKGIELEARWLATDNLSFTFAGN
TQETTVKGPDASFGYIPVWATGLDPIDGYGAAYAVYNLATSPVGQPGDYEFRLVPQTVASVFGSYVSDPYEWGQFGVTGG
ITSVSETAGKLANPVILPAYETVNLSAFYTFNDYEIAFNVDNLFDELYFQPVTDTYSDMAVLPGRGTEYRVTFKKKF
>Mature_797_residues
MRALYYLTSVLTAIALANSAWAQEGSAPATEEVADDTAVLDTVVVVSDRVGLLEKSSSESVFGMGKSLLETPRSATLVSD
LTLERYGIEEVDDLIAIAPGTFTGSYYGVKGAVNARGTLAESYFNGFKRVENRGTYPTLLGAASQVDIVRGPPTPAFGPG
KVGGLINVIPKTGRANGSDEMAGQAEVTVGSYGKFNANGQVGVPVGDRGGVYGYVEYENSDSFYRGVSPEHLMIQLSGEY
DLTDTLTLTMSGQYFDSDGYVQSPGWNRVTQDLIDNQNYITGRNTAVVDTDGNGRITPGEAGGSFVVGYFGFPPPVDPRF
QLTEGVGTAKLDARTIFISDADFSKSTTNTLYFKAEQQIGDDTLNVELFYDDMENQRFVSYGFPADYDAWAGEGRLSYDF
DAGTEDSFIRSTNKVGFGYRRQDAIKKETYNSGYISLDRRDIIFGATPNDIIDDPFSVEPGIEGVGWDMTVDSSWTNKGL
FALSDISIGEYASLLLGGRYDWYDATSIDTGALCYCPANIEFDAAQEEFSYSASFSLNTPFGLFPYVTYAETAALEIGQA
GDITPGLISGDQWISDSELTEAGVKFELLSGTLVGSLSGYEQSRTRLSMFDNVVATEAKGIELEARWLATDNLSFTFAGN
TQETTVKGPDASFGYIPVWATGLDPIDGYGAAYAVYNLATSPVGQPGDYEFRLVPQTVASVFGSYVSDPYEWGQFGVTGG
ITSVSETAGKLANPVILPAYETVNLSAFYTFNDYEIAFNVDNLFDELYFQPVTDTYSDMAVLPGRGTEYRVTFKKKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86271; Mature: 86271

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALYYLTSVLTAIALANSAWAQEGSAPATEEVADDTAVLDTVVVVSDRVGLLEKSSSES
CCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCHHHHHEEEEECCCCCCEECCCCCC
VFGMGKSLLETPRSATLVSDLTLERYGIEEVDDLIAIAPGTFTGSYYGVKGAVNARGTLA
HHHCCHHHHHCCCCCEEHHHCCHHHCCHHHHCCEEEECCCCCCCCEEEECCCCCCCCHHH
ESYFNGFKRVENRGTYPTLLGAASQVDIVRGPPTPAFGPGKVGGLINVIPKTGRANGSDE
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHH
MAGQAEVTVGSYGKFNANGQVGVPVGDRGGVYGYVEYENSDSFYRGVSPEHLMIQLSGEY
CCCCEEEEECCCCEECCCCEEECCCCCCCCEEEEEEECCCCCEECCCCCCEEEEEECCCC
DLTDTLTLTMSGQYFDSDGYVQSPGWNRVTQDLIDNQNYITGRNTAVVDTDGNGRITPGE
CCCEEEEEEEECEEECCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEECCCCEECCCC
AGGSFVVGYFGFPPPVDPRFQLTEGVGTAKLDARTIFISDADFSKSTTNTLYFKAEQQIG
CCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEHHHCC
DDTLNVELFYDDMENQRFVSYGFPADYDAWAGEGRLSYDFDAGTEDSFIRSTNKVGFGYR
CCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCH
RQDAIKKETYNSGYISLDRRDIIFGATPNDIIDDPFSVEPGIEGVGWDMTVDSSWTNKGL
HHHHHHHHCCCCCEEEECCCEEEEECCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCE
FALSDISIGEYASLLLGGRYDWYDATSIDTGALCYCPANIEFDAAQEEFSYSASFSLNTP
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEEECCCC
FGLFPYVTYAETAALEIGQAGDITPGLISGDQWISDSELTEAGVKFELLSGTLVGSLSGY
CCCCCCHHHHHHHEEECCCCCCCCCCEECCCCCCCCCHHHHCCCEEEEECCEEEECCCCC
EQSRTRLSMFDNVVATEAKGIELEARWLATDNLSFTFAGNTQETTVKGPDASFGYIPVWA
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEECCCCCEEECCCCCCCCEEEEEE
TGLDPIDGYGAAYAVYNLATSPVGQPGDYEFRLVPQTVASVFGSYVSDPYEWGQFGVTGG
CCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEEECHHHHHHHHHHHHCCCHHHCCCCCCCC
ITSVSETAGKLANPVILPAYETVNLSAFYTFNDYEIAFNVDNLFDELYFQPVTDTYSDMA
CCHHHHHHHHHCCCEEEECEEEEEEEEEEEECCEEEEEEHHHHHHHHEEECCCCCCCCEE
VLPGRGTEYRVTFKKKF
EECCCCCEEEEEEEECC
>Mature Secondary Structure
MRALYYLTSVLTAIALANSAWAQEGSAPATEEVADDTAVLDTVVVVSDRVGLLEKSSSES
CCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHCCCHHHHHEEEEECCCCCCEECCCCCC
VFGMGKSLLETPRSATLVSDLTLERYGIEEVDDLIAIAPGTFTGSYYGVKGAVNARGTLA
HHHCCHHHHHCCCCCEEHHHCCHHHCCHHHHCCEEEECCCCCCCCEEEECCCCCCCCHHH
ESYFNGFKRVENRGTYPTLLGAASQVDIVRGPPTPAFGPGKVGGLINVIPKTGRANGSDE
HHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHH
MAGQAEVTVGSYGKFNANGQVGVPVGDRGGVYGYVEYENSDSFYRGVSPEHLMIQLSGEY
CCCCEEEEECCCCEECCCCEEECCCCCCCCEEEEEEECCCCCEECCCCCCEEEEEECCCC
DLTDTLTLTMSGQYFDSDGYVQSPGWNRVTQDLIDNQNYITGRNTAVVDTDGNGRITPGE
CCCEEEEEEEECEEECCCCEEECCCCHHHHHHHHCCCCEEECCCEEEEEECCCCEECCCC
AGGSFVVGYFGFPPPVDPRFQLTEGVGTAKLDARTIFISDADFSKSTTNTLYFKAEQQIG
CCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEHHHCC
DDTLNVELFYDDMENQRFVSYGFPADYDAWAGEGRLSYDFDAGTEDSFIRSTNKVGFGYR
CCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCH
RQDAIKKETYNSGYISLDRRDIIFGATPNDIIDDPFSVEPGIEGVGWDMTVDSSWTNKGL
HHHHHHHHCCCCCEEEECCCEEEEECCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCE
FALSDISIGEYASLLLGGRYDWYDATSIDTGALCYCPANIEFDAAQEEFSYSASFSLNTP
EEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEEECCCC
FGLFPYVTYAETAALEIGQAGDITPGLISGDQWISDSELTEAGVKFELLSGTLVGSLSGY
CCCCCCHHHHHHHEEECCCCCCCCCCEECCCCCCCCCHHHHCCCEEEEECCEEEECCCCC
EQSRTRLSMFDNVVATEAKGIELEARWLATDNLSFTFAGNTQETTVKGPDASFGYIPVWA
HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEECCCCCEEECCCCCCCCEEEEEE
TGLDPIDGYGAAYAVYNLATSPVGQPGDYEFRLVPQTVASVFGSYVSDPYEWGQFGVTGG
CCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEEECHHHHHHHHHHHHCCCHHHCCCCCCCC
ITSVSETAGKLANPVILPAYETVNLSAFYTFNDYEIAFNVDNLFDELYFQPVTDTYSDMA
CCHHHHHHHHHCCCEEEECEEEEEEEEEEEECCEEEEEEHHHHHHHHEEECCCCCCCCEE
VLPGRGTEYRVTFKKKF
EECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA