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The map label for this gene is yvrB [H]

Identifier: 114797228

GI number: 114797228

Start: 1551076

End: 1552065

Strand: Direct

Name: yvrB [H]

Synonym: HNE_1516

Alternate gene names: 114797228

Gene position: 1551076-1552065 (Clockwise)

Preceding gene: 114799541

Following gene: 114797990

Centisome position: 41.86

GC content: 59.39

Gene sequence:

>990_bases
ATGATTGAGCGTCTTTTGTTGCCTGGCCTGATCGCCGCCTCCGTGCTCGCCATCTTCATCGCCTGCCTTCTGGGCTCTAC
ACCTTTGCCTGCCGATCGGGTCATGGCAGCTTTCTTTGGCGGCGCCGATACCGGTGACCGTCTCGTCGTCTGGCAGATCC
GTCTGCCACGGGCCATCGCCGCCTTCATCACTGGCGCAGCGCTCGGCATCAGCGGCGCCGCATTGCAGGGCTTGTTGCGT
AATCCGCTCGCAGAACCGGGCGTCCTGGGTGTCTCGGCTTCAGCCTCCCTGTTTGCAACCTTTTCGCTATATTACGGTCT
TGTCGCGCTCTCGCCTTGGGTTCTGCCACTCTCTGCAATTGGGGGCGCACTCGCCGCGACTGTTTTGATTGCGCTTGCCG
CCATTCGGACGCGGTCTGTCGTCACGCTCATTCTGATAGGTGTCGGGCTTTCCAGCTTTTCCGGAGCAGCAATGACTTTG
CTCATGAACCTTGCCCCCAATCCTTTCTCACTGTCCGACATGATCAACTGGATGCTCGGATCGGTTGCCAATCGCAGCTT
TCAGGAAGTTGGCCTCGTAATACCGTTCATTGTCGCGGGTAGCGGAATTCTGTTTATGTCGCGCCGCGGGTTATCGGCCC
TGACCCTTGGCGAGGAAGCAGCAAGTGGGGTCGGGCTCAATCTGAGAAATCAGCGTATACTGACGGTTCTTGGCGCCGGT
CTGGCAACGGGTGGATCGGTTGCGCTGGCCGGAGCCATCGGTTTTGCCGGGATTGTCGCTCCGCACATTATCCGACCCCT
GGTGAAGCATGATCCGGCGCGATCGCTCATTCCATCGGCGCTTCTGGCGGGCCTGTTTCTCGTTTTGGCGGATATAGGGG
TACGCCTGCTGCCGACCTCCAACGAGCTTAAACTGGGCGTCGTCGCTTCGTTGGTCGGCGCTCCTGCCTTTGTCTGGATC
GCAATGAGAAGGCGTACCCTGAATGGCTGA

Upstream 100 bases:

>100_bases
TGAATGAGCAGACGATGGTCCCCCTGAAGGGCGCCTGGACCGCCTGTGGCGGCTGGTTCATTCTCGATGCCATCGAAGCC
TTGGCAGAGGGAGGCGCGGA

Downstream 100 bases:

>100_bases
CCTTGTGATCCGCAACCTTTCTGTGAGCGCTGGCAAGGTCAAACTTGTTTGCGAGGCGAATTTCAGTCTGGCGCAGGGCG
AACTGGTGGCACTGCTGGGC

Product: iron compound ABC transporter permease

Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MIERLLLPGLIAASVLAIFIACLLGSTPLPADRVMAAFFGGADTGDRLVVWQIRLPRAIAAFITGAALGISGAALQGLLR
NPLAEPGVLGVSASASLFATFSLYYGLVALSPWVLPLSAIGGALAATVLIALAAIRTRSVVTLILIGVGLSSFSGAAMTL
LMNLAPNPFSLSDMINWMLGSVANRSFQEVGLVIPFIVAGSGILFMSRRGLSALTLGEEAASGVGLNLRNQRILTVLGAG
LATGGSVALAGAIGFAGIVAPHIIRPLVKHDPARSLIPSALLAGLFLVLADIGVRLLPTSNELKLGVVASLVGAPAFVWI
AMRRRTLNG

Sequences:

>Translated_329_residues
MIERLLLPGLIAASVLAIFIACLLGSTPLPADRVMAAFFGGADTGDRLVVWQIRLPRAIAAFITGAALGISGAALQGLLR
NPLAEPGVLGVSASASLFATFSLYYGLVALSPWVLPLSAIGGALAATVLIALAAIRTRSVVTLILIGVGLSSFSGAAMTL
LMNLAPNPFSLSDMINWMLGSVANRSFQEVGLVIPFIVAGSGILFMSRRGLSALTLGEEAASGVGLNLRNQRILTVLGAG
LATGGSVALAGAIGFAGIVAPHIIRPLVKHDPARSLIPSALLAGLFLVLADIGVRLLPTSNELKLGVVASLVGAPAFVWI
AMRRRTLNG
>Mature_329_residues
MIERLLLPGLIAASVLAIFIACLLGSTPLPADRVMAAFFGGADTGDRLVVWQIRLPRAIAAFITGAALGISGAALQGLLR
NPLAEPGVLGVSASASLFATFSLYYGLVALSPWVLPLSAIGGALAATVLIALAAIRTRSVVTLILIGVGLSSFSGAAMTL
LMNLAPNPFSLSDMINWMLGSVANRSFQEVGLVIPFIVAGSGILFMSRRGLSALTLGEEAASGVGLNLRNQRILTVLGAG
LATGGSVALAGAIGFAGIVAPHIIRPLVKHDPARSLIPSALLAGLFLVLADIGVRLLPTSNELKLGVVASLVGAPAFVWI
AMRRRTLNG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788004, Length=278, Percent_Identity=40.6474820143885, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1790740, Length=305, Percent_Identity=34.0983606557377, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786805, Length=335, Percent_Identity=34.0298507462687, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790741, Length=328, Percent_Identity=29.2682926829268, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786347, Length=284, Percent_Identity=29.9295774647887, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786804, Length=260, Percent_Identity=32.6923076923077, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 33656; Mature: 33656

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERLLLPGLIAASVLAIFIACLLGSTPLPADRVMAAFFGGADTGDRLVVWQIRLPRAIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECHHHHH
AFITGAALGISGAALQGLLRNPLAEPGVLGVSASASLFATFSLYYGLVALSPWVLPLSAI
HHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GGALAATVLIALAAIRTRSVVTLILIGVGLSSFSGAAMTLLMNLAPNPFSLSDMINWMLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
SVANRSFQEVGLVIPFIVAGSGILFMSRRGLSALTLGEEAASGVGLNLRNQRILTVLGAG
HHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHCCCCCCCCCCCEEHHHHCC
LATGGSVALAGAIGFAGIVAPHIIRPLVKHDPARSLIPSALLAGLFLVLADIGVRLLPTS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCC
NELKLGVVASLVGAPAFVWIAMRRRTLNG
CCCHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIERLLLPGLIAASVLAIFIACLLGSTPLPADRVMAAFFGGADTGDRLVVWQIRLPRAIA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECHHHHH
AFITGAALGISGAALQGLLRNPLAEPGVLGVSASASLFATFSLYYGLVALSPWVLPLSAI
HHHHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GGALAATVLIALAAIRTRSVVTLILIGVGLSSFSGAAMTLLMNLAPNPFSLSDMINWMLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
SVANRSFQEVGLVIPFIVAGSGILFMSRRGLSALTLGEEAASGVGLNLRNQRILTVLGAG
HHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHCCCCCCCCCCCEEHHHHCC
LATGGSVALAGAIGFAGIVAPHIIRPLVKHDPARSLIPSALLAGLFLVLADIGVRLLPTS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEECCC
NELKLGVVASLVGAPAFVWIAMRRRTLNG
CCCHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]

Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]