Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is 114797226

Identifier: 114797226

GI number: 114797226

Start: 3515148

End: 3516875

Strand: Direct

Name: 114797226

Synonym: HNE_3371

Alternate gene names: NA

Gene position: 3515148-3516875 (Clockwise)

Preceding gene: 114797584

Following gene: 114797222

Centisome position: 94.88

GC content: 67.48

Gene sequence:

>1728_bases
TTGGCCGAGAGCGAGTCTGATTTCAACGCCGACCGTACACGCACAAGCAGCGATGACGCCGCGCTTTGGCGCCGCTTCCG
GGGCGTGGTTGGCGAGGACGCGAAAGTCTCCACGCTCCAGAAGCTGAAACTGACAGGCCACGGCCCGGACGGCTTCTCCC
TCCACATTTCCAATCTTCTGCCCCCGGACGACCGGCGCGGCGACGCGCTGATGCGCGGCGTCTGGCGTATCGGCCAGCAG
CGCATGGAGATGGCACCGGGCGACGCGCCGTGGAGCCTGGAAATGCCCTCCCGCCACTTCGCAGACCGGGTACATCGGTT
TGGCTGGCTACCCGATCTGATGGCACAGGGCGAAGACGGCATCGCCCTTGCCCGCGCCCTGACCGATGACTGGATCATCC
GCTTTGGCAAATTTAACGGCTTTGCCTGGCGTATCGAGCCGACCGCGAGCCGCGTGTGGAACTGGATGCGCTGTGGCCCC
GGCCTGTTTGAAATGGGCACGCCGGAAGAACGCAGTGAACGGATTGATGCCCTCTCCCGGCAGCTACGATATCTGGCCGA
GGTGATCGACAGCGCGCATGATCCCAAATCCCGCTGGATGGGCGCTGTGGCGCTTGTCGCCCATTCCCTCTGTCTGCGGA
AGGGCGCGGGCCTCAGCGAAGCGCTCGCGCGCCTTGAAGGCGAGGTTACCGCGCAGATCCTGCCCGATGGCGGCCACGTT
ACCCGCAGCCCGGCGCATACCCTCTCTTCCCTGCTGCACCTGCAGACGGTCGAGGAAGCCCTGATCCGCGTCCAGCGCCC
GGTGCCTGACTGGATCACCAAATGGGTGCCCCGCATGGGCGCCATGCTCGCCTTCTTCCGCAGTGGCGATGGTGCGCTCG
ACACCTTCAATGACGGCGACGAGTCGCGCGCCGAACTGGTCGAGGCCGTCCTCTCGCGCCTCGAGACGCCCCCGCGCCGC
TTCCTGTTCGCGCCCAAATCCGGCTTCCAGAAGATTGAGCGTGGCACCCTGCGCTTTGTGCTAGATTGCGGCGAGGCCCC
GCCCCGTCCGTTTGCGGAGCATGCCCGCGCCGGCGCGCTTGGCTTTGAACTCTCCGATGGCCCGGCGCGCCTCGTCACCT
CCTGCGGCTACTCCTCCGAGGTGAATGTCGACTGGCAGGCCGCCGTGCGCCGCACCAGCGCCCACTCCACCCTCGTGCTG
GCCGGCCGCGACAGCTCTGCCTTCGTCTTCAATGACGAGACCCGCATGCGCGCCGTCACCGGCCCGGAAGGCATTGCCGC
CAAGCGCCTGGAAGAGGCCAACGAGATATGGCTCGACGCCCAGCATGCCGGCTACAAGGCCGCCTATGGCCTGCTCCACC
GCCGCCGCATCTTCGTCTCCGGCGCGGGCGACCGGCTCACCGGCGAGGACTCCCTCGTGCGCCCGGTCGCCCAGCCCATG
AGCGACGACAAGAAGGGCATCCCCTTCGAGATCCGCTTCCACCTTCACCCCACCGTCACCGCCCATATGGGCCGCGAAGT
CATCCGCCTCGTCAGCGAGACCGGCGCCATCTGGCGGTTCAAGACCAGCCACGAAGGCGCGCGCCTCGAACGCACCGCCT
ATCTCGCCCGCGGCGTGGTGGACACGCCCGAACAGATCGTGCTGGCGGGCTTTGCCGACCCCAACGCCGATGGCAGCCAG
CCGCCCAACTGTGTCCGCTGGGCGTTCATCCGCGAAACGCCCGCCTGA

Upstream 100 bases:

>100_bases
TGCCGTCTTCAAGGGCGGGCCCGATGCCTATGCTGCCAACATCCGCGCCCTCCGGCCGCAAGTTAACGCCTGATCGCAGA
GTTCGGGGATAGGTCCAGCC

Downstream 100 bases:

>100_bases
GACGGCCTGATACGGTCCGGCATGTCTTGACGCCGCCTCAGGGGGTGCTAGGCCGCGCGCAGCTTTCCCAACGCCTTTGA
AGGAGCAGCCCATATGTCCG

Product: heparinase II/III-like family protein

Products: NA

Alternate protein names: Heparinase II/III-Like; Heparinase II/III-Like Protein; Heparinase II/III-Like Family Protein; Cytoplasmic Protein; Heparinase II/Iii Family Protein

Number of amino acids: Translated: 575; Mature: 574

Protein sequence:

>575_residues
MAESESDFNADRTRTSSDDAALWRRFRGVVGEDAKVSTLQKLKLTGHGPDGFSLHISNLLPPDDRRGDALMRGVWRIGQQ
RMEMAPGDAPWSLEMPSRHFADRVHRFGWLPDLMAQGEDGIALARALTDDWIIRFGKFNGFAWRIEPTASRVWNWMRCGP
GLFEMGTPEERSERIDALSRQLRYLAEVIDSAHDPKSRWMGAVALVAHSLCLRKGAGLSEALARLEGEVTAQILPDGGHV
TRSPAHTLSSLLHLQTVEEALIRVQRPVPDWITKWVPRMGAMLAFFRSGDGALDTFNDGDESRAELVEAVLSRLETPPRR
FLFAPKSGFQKIERGTLRFVLDCGEAPPRPFAEHARAGALGFELSDGPARLVTSCGYSSEVNVDWQAAVRRTSAHSTLVL
AGRDSSAFVFNDETRMRAVTGPEGIAAKRLEEANEIWLDAQHAGYKAAYGLLHRRRIFVSGAGDRLTGEDSLVRPVAQPM
SDDKKGIPFEIRFHLHPTVTAHMGREVIRLVSETGAIWRFKTSHEGARLERTAYLARGVVDTPEQIVLAGFADPNADGSQ
PPNCVRWAFIRETPA

Sequences:

>Translated_575_residues
MAESESDFNADRTRTSSDDAALWRRFRGVVGEDAKVSTLQKLKLTGHGPDGFSLHISNLLPPDDRRGDALMRGVWRIGQQ
RMEMAPGDAPWSLEMPSRHFADRVHRFGWLPDLMAQGEDGIALARALTDDWIIRFGKFNGFAWRIEPTASRVWNWMRCGP
GLFEMGTPEERSERIDALSRQLRYLAEVIDSAHDPKSRWMGAVALVAHSLCLRKGAGLSEALARLEGEVTAQILPDGGHV
TRSPAHTLSSLLHLQTVEEALIRVQRPVPDWITKWVPRMGAMLAFFRSGDGALDTFNDGDESRAELVEAVLSRLETPPRR
FLFAPKSGFQKIERGTLRFVLDCGEAPPRPFAEHARAGALGFELSDGPARLVTSCGYSSEVNVDWQAAVRRTSAHSTLVL
AGRDSSAFVFNDETRMRAVTGPEGIAAKRLEEANEIWLDAQHAGYKAAYGLLHRRRIFVSGAGDRLTGEDSLVRPVAQPM
SDDKKGIPFEIRFHLHPTVTAHMGREVIRLVSETGAIWRFKTSHEGARLERTAYLARGVVDTPEQIVLAGFADPNADGSQ
PPNCVRWAFIRETPA
>Mature_574_residues
AESESDFNADRTRTSSDDAALWRRFRGVVGEDAKVSTLQKLKLTGHGPDGFSLHISNLLPPDDRRGDALMRGVWRIGQQR
MEMAPGDAPWSLEMPSRHFADRVHRFGWLPDLMAQGEDGIALARALTDDWIIRFGKFNGFAWRIEPTASRVWNWMRCGPG
LFEMGTPEERSERIDALSRQLRYLAEVIDSAHDPKSRWMGAVALVAHSLCLRKGAGLSEALARLEGEVTAQILPDGGHVT
RSPAHTLSSLLHLQTVEEALIRVQRPVPDWITKWVPRMGAMLAFFRSGDGALDTFNDGDESRAELVEAVLSRLETPPRRF
LFAPKSGFQKIERGTLRFVLDCGEAPPRPFAEHARAGALGFELSDGPARLVTSCGYSSEVNVDWQAAVRRTSAHSTLVLA
GRDSSAFVFNDETRMRAVTGPEGIAAKRLEEANEIWLDAQHAGYKAAYGLLHRRRIFVSGAGDRLTGEDSLVRPVAQPMS
DDKKGIPFEIRFHLHPTVTAHMGREVIRLVSETGAIWRFKTSHEGARLERTAYLARGVVDTPEQIVLAGFADPNADGSQP
PNCVRWAFIRETPA

Specific function: Unknown

COG id: COG5360

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63822; Mature: 63691

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESESDFNADRTRTSSDDAALWRRFRGVVGEDAKVSTLQKLKLTGHGPDGFSLHISNLL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCEEEECCCC
PPDDRRGDALMRGVWRIGQQRMEMAPGDAPWSLEMPSRHFADRVHRFGWLPDLMAQGEDG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHCCCCC
IALARALTDDWIIRFGKFNGFAWRIEPTASRVWNWMRCGPGLFEMGTPEERSERIDALSR
HHHHHHHHHHHHEEEECCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
QLRYLAEVIDSAHDPKSRWMGAVALVAHSLCLRKGAGLSEALARLEGEVTAQILPDGGHV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCC
TRSPAHTLSSLLHLQTVEEALIRVQRPVPDWITKWVPRMGAMLAFFRSGDGALDTFNDGD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ESRAELVEAVLSRLETPPRRFLFAPKSGFQKIERGTLRFVLDCGEAPPRPFAEHARAGAL
HHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCC
GFELSDGPARLVTSCGYSSEVNVDWQAAVRRTSAHSTLVLAGRDSSAFVFNDETRMRAVT
CEEECCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEEC
GPEGIAAKRLEEANEIWLDAQHAGYKAAYGLLHRRRIFVSGAGDRLTGEDSLVRPVAQPM
CCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHCC
SDDKKGIPFEIRFHLHPTVTAHMGREVIRLVSETGAIWRFKTSHEGARLERTAYLARGVV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCC
DTPEQIVLAGFADPNADGSQPPNCVRWAFIRETPA
CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
AESESDFNADRTRTSSDDAALWRRFRGVVGEDAKVSTLQKLKLTGHGPDGFSLHISNLL
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCEEEECCCC
PPDDRRGDALMRGVWRIGQQRMEMAPGDAPWSLEMPSRHFADRVHRFGWLPDLMAQGEDG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHCCCCC
IALARALTDDWIIRFGKFNGFAWRIEPTASRVWNWMRCGPGLFEMGTPEERSERIDALSR
HHHHHHHHHHHHEEEECCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
QLRYLAEVIDSAHDPKSRWMGAVALVAHSLCLRKGAGLSEALARLEGEVTAQILPDGGHV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCC
TRSPAHTLSSLLHLQTVEEALIRVQRPVPDWITKWVPRMGAMLAFFRSGDGALDTFNDGD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ESRAELVEAVLSRLETPPRRFLFAPKSGFQKIERGTLRFVLDCGEAPPRPFAEHARAGAL
HHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCC
GFELSDGPARLVTSCGYSSEVNVDWQAAVRRTSAHSTLVLAGRDSSAFVFNDETRMRAVT
CEEECCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEEECCCCCEEEEC
GPEGIAAKRLEEANEIWLDAQHAGYKAAYGLLHRRRIFVSGAGDRLTGEDSLVRPVAQPM
CCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHCC
SDDKKGIPFEIRFHLHPTVTAHMGREVIRLVSETGAIWRFKTSHEGARLERTAYLARGVV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCC
DTPEQIVLAGFADPNADGSQPPNCVRWAFIRETPA
CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA