Click here to switch to the map view.

The map label for this gene is rpe [H]

Identifier: 114797584

GI number: 114797584

Start: 3514452

End: 3515120

Strand: Direct

Name: rpe [H]

Synonym: HNE_3370

Alternate gene names: 114797584

Gene position: 3514452-3515120 (Clockwise)

Preceding gene: 114798828

Following gene: 114797226

Centisome position: 94.86

GC content: 62.93

Gene sequence:

>669_bases
ATGAAACCCGTCCTGATTTCTCCTTCGATCCTTTCTGCAGACTTTGCCAAGCTGGGCGAGGAAATCCGCGCCATTGATGC
AGCCGGCGCCGACATGATCCATGTGGACGTTATGGACGGCCATTTCGTGCCAAATCTTACCTTCGGTCCCCCCGTCATCG
AGAAGCTGCGCCCGCACACGAAGAAGCTGTTCGACGTGCATCTGATGATCGCGCCGGTGGACCCGTTCATTCAGGACTTC
GCCAAGGCGGGCGCCGACATCCTCACGGTCCATCCCGAGGCCGGGGCCCATTTGCACCGCACGATCCAGGCCATCCGCGC
CGCCGGCATGCGCCCCGGCGTGGCACTGAACCCCGGCACACCCGCCAGCGTGATCGAACCGGTGATCGGGGATATTGATC
TGGTGCTGGTGATGTCGGTGAACCCCGGCTTTGGCGGGCAGAGCTTCATCGAAAGCCAGCTTAGGAAAGTGGAGCAGCTT
CGCCGCATGATTGATGCGTCGGGCCGGGACATCATCCTGGAAATTGACGGCGGCCTGAACGCCGAAACCGCGCCGCGTGC
CATTGCCGCGGGTGTGACGGCGATTGTCGCCGGGTCTGCCGTCTTCAAGGGCGGGCCCGATGCCTATGCTGCCAACATCC
GCGCCCTCCGGCCGCAAGTTAACGCCTGA

Upstream 100 bases:

>100_bases
CGCGGCCGGCTGTTTCCATTTCCGGCACAGGCCGCGACAAAACAGGATTTCTGAGCGAAAGGACGTTTCACAAAGCGTTA
TTTCGCTTTAGGGAGAGGGG

Downstream 100 bases:

>100_bases
TCGCAGAGTTCGGGGATAGGTCCAGCCTTGGCCGAGAGCGAGTCTGATTTCAACGCCGACCGTACACGCACAAGCAGCGA
TGACGCCGCGCTTTGGCGCC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKPVLISPSILSADFAKLGEEIRAIDAAGADMIHVDVMDGHFVPNLTFGPPVIEKLRPHTKKLFDVHLMIAPVDPFIQDF
AKAGADILTVHPEAGAHLHRTIQAIRAAGMRPGVALNPGTPASVIEPVIGDIDLVLVMSVNPGFGGQSFIESQLRKVEQL
RRMIDASGRDIILEIDGGLNAETAPRAIAAGVTAIVAGSAVFKGGPDAYAANIRALRPQVNA

Sequences:

>Translated_222_residues
MKPVLISPSILSADFAKLGEEIRAIDAAGADMIHVDVMDGHFVPNLTFGPPVIEKLRPHTKKLFDVHLMIAPVDPFIQDF
AKAGADILTVHPEAGAHLHRTIQAIRAAGMRPGVALNPGTPASVIEPVIGDIDLVLVMSVNPGFGGQSFIESQLRKVEQL
RRMIDASGRDIILEIDGGLNAETAPRAIAAGVTAIVAGSAVFKGGPDAYAANIRALRPQVNA
>Mature_222_residues
MKPVLISPSILSADFAKLGEEIRAIDAAGADMIHVDVMDGHFVPNLTFGPPVIEKLRPHTKKLFDVHLMIAPVDPFIQDF
AKAGADILTVHPEAGAHLHRTIQAIRAAGMRPGVALNPGTPASVIEPVIGDIDLVLVMSVNPGFGGQSFIESQLRKVEQL
RRMIDASGRDIILEIDGGLNAETAPRAIAAGVTAIVAGSAVFKGGPDAYAANIRALRPQVNA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=200, Percent_Identity=42.5, Blast_Score=165, Evalue=4e-41,
Organism=Homo sapiens, GI219879828, Length=200, Percent_Identity=40.5, Blast_Score=155, Evalue=3e-38,
Organism=Homo sapiens, GI24307923, Length=156, Percent_Identity=32.6923076923077, Blast_Score=88, Evalue=6e-18,
Organism=Escherichia coli, GI1789788, Length=221, Percent_Identity=51.5837104072398, Blast_Score=216, Evalue=7e-58,
Organism=Escherichia coli, GI1790523, Length=196, Percent_Identity=38.7755102040816, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1790754, Length=202, Percent_Identity=28.2178217821782, Blast_Score=87, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17552948, Length=211, Percent_Identity=41.2322274881517, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=215, Percent_Identity=42.7906976744186, Blast_Score=172, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24586301, Length=218, Percent_Identity=38.5321100917431, Blast_Score=149, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23409; Mature: 23409

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVLISPSILSADFAKLGEEIRAIDAAGADMIHVDVMDGHFVPNLTFGPPVIEKLRPHT
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCHHH
KKLFDVHLMIAPVDPFIQDFAKAGADILTVHPEAGAHLHRTIQAIRAAGMRPGVALNPGT
HHHEEEEEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCC
PASVIEPVIGDIDLVLVMSVNPGFGGQSFIESQLRKVEQLRRMIDASGRDIILEIDGGLN
CHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
AETAPRAIAAGVTAIVAGSAVFKGGPDAYAANIRALRPQVNA
CCCCHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKPVLISPSILSADFAKLGEEIRAIDAAGADMIHVDVMDGHFVPNLTFGPPVIEKLRPHT
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCHHH
KKLFDVHLMIAPVDPFIQDFAKAGADILTVHPEAGAHLHRTIQAIRAAGMRPGVALNPGT
HHHEEEEEEEECCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCC
PASVIEPVIGDIDLVLVMSVNPGFGGQSFIESQLRKVEQLRRMIDASGRDIILEIDGGLN
CHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
AETAPRAIAAGVTAIVAGSAVFKGGPDAYAANIRALRPQVNA
CCCCHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA