| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is purH [H]
Identifier: 114797222
GI number: 114797222
Start: 3516969
End: 3518558
Strand: Direct
Name: purH [H]
Synonym: HNE_3372
Alternate gene names: 114797222
Gene position: 3516969-3518558 (Clockwise)
Preceding gene: 114797226
Following gene: 114797976
Centisome position: 94.92
GC content: 66.79
Gene sequence:
>1590_bases ATGTCCGGCGCCCCCGTCACCCTCCGCCGCGCGCTTATCTCCGTGTCCGACAAGACCGGCCTGATCGAGCAGGCAAAGCG CCTCGCCGCCCTCGGTGTCGAGCTTGTCTCTACGGGGGGCACCTCCAAGGCGCTGAAAGACGCCGGCCTCGCGGTCAAAG ACGTGTCAGACCTCACCGGCTTCCCCGAAATGATGGACGGGCGCGTCAAGACGCTCCACCCGGCCGTGCATGGCGGCCTC CTTTACCTGCGCGACAACCCCTCCCACGTGAAAGACGCGGCAGACCACGGCATCGGCGCCATCGACCTGATCTACGTCAA CCTCTACCCCTTCGAGGCCACGGTGGCTTCTGGCGCAGACTTTGAAACCTGCATCGAGAATATCGACATCGGTGGCCCCG CCATGCTGCGCGCCGCCGCCAAGAACGGCGCCTTCGTGGCCGTCTGCACCGATGGCGGCGATGTCGACGCCGTCCTCGCC CAGGCCGAGGCCAATGCCGGCGCGGTGAGCCACGCCCTCCTCCGCCGCCTCGCCGCGAAAACTTACGCCCGCACCGCCGC CTATGACGCGGCCATTTCCGGCTGGTACGCCAAGCAGATCGGCGAGGACGCGCCGGACTGGGCCGCCATTGGTGGCAAGC TCCAGCAATCCCTGCGCTATGGCGAAAACCCCCACCAGAAAGCCGCCTTCTACGTCACCGGCGAAAAGCGCCCGGGCGTG GCCACCGCGCGCCAGCTTCAGGGTAAGGAGCTTTCCTACAACAACATCAACGACACCGACGCGGCCTATGAGCTGATCGG GGAGCTGGGCAGCGACAAACCCGCCGTCGCCATCATCAAGCACGCCAACCCCTGCGGCGTGGCGCTCGGCCCGAACATCA TCGAAGCCTACAAAGCGGCCCTCGCCTGCGACCCCACATCGGCCTTCGGCGGCATCGTCGCCCTCAACCGCCCGCTGGAC GAGGAAACGGCGAAGGTGATCACAGAGATCTTCACCGAAGTCGTCATCGCGCCGGGCGCGGACGCGGCAGCTGAAGCGAT CTTTGCCAAGAAGAAAAACCTCCGCCTCCTGATCACTGACGACCTGCCCGACCCGGCCACCACCGGCACGTTCGTGAAAA CCGTCGCCGGCGGCTTCCTGCTGCAAGACCGCGACGCGGGCCGCATCCACCTTGACGACCTTGAAGTCGTCACCAAACGC GCGCCCACCGCGCAGGAACTGGAAGACATGCTGTTTGCCTGGCGCGTCGCCAAGCATGTGAAATCCAACACCATCGTCTA CGCGAAAGACGGCGTCACCGCCGGCATCGGCGCCGGCCAGATGAGCCGCATCGACAGCGCCCGCATCGCCGCCCGCAAGG CCCAGGACGCCCAGGAAACCGCCGGCTGGTCCGACCCGCGCACCAAAGGCTGCGTCGCCGCCTCCGACGCCTTCTTTCCG TTTGCGGATGGTTTGTTGCAGGCGGCCTCAGCCGGCGCCACCGCCGTCATCCAACCGGGCGGCTCAATCCGCGACGACGA AGTGATCGCCGCGGCGGACGAGGCGGGGCTCGCGATGGTGTTCACGGGGATGCGGCACTTCAGGCATTGA
Upstream 100 bases:
>100_bases CGCCTGAGACGGCCTGATACGGTCCGGCATGTCTTGACGCCGCCTCAGGGGGTGCTAGGCCGCGCGCAGCTTTCCCAACG CCTTTGAAGGAGCAGCCCAT
Downstream 100 bases:
>100_bases GGCCGGTGGGCTGATCCCAGCCGATTCAATCCAGTTGCAATCTAGCGCATGTTGCGTCACCCCATGATTGGGGAGGGACC GGCATGACACGGGGATTACT
Product: bifunctional purine biosynthesis protein PurH
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MSGAPVTLRRALISVSDKTGLIEQAKRLAALGVELVSTGGTSKALKDAGLAVKDVSDLTGFPEMMDGRVKTLHPAVHGGL LYLRDNPSHVKDAADHGIGAIDLIYVNLYPFEATVASGADFETCIENIDIGGPAMLRAAAKNGAFVAVCTDGGDVDAVLA QAEANAGAVSHALLRRLAAKTYARTAAYDAAISGWYAKQIGEDAPDWAAIGGKLQQSLRYGENPHQKAAFYVTGEKRPGV ATARQLQGKELSYNNINDTDAAYELIGELGSDKPAVAIIKHANPCGVALGPNIIEAYKAALACDPTSAFGGIVALNRPLD EETAKVITEIFTEVVIAPGADAAAEAIFAKKKNLRLLITDDLPDPATTGTFVKTVAGGFLLQDRDAGRIHLDDLEVVTKR APTAQELEDMLFAWRVAKHVKSNTIVYAKDGVTAGIGAGQMSRIDSARIAARKAQDAQETAGWSDPRTKGCVAASDAFFP FADGLLQAASAGATAVIQPGGSIRDDEVIAAADEAGLAMVFTGMRHFRH
Sequences:
>Translated_529_residues MSGAPVTLRRALISVSDKTGLIEQAKRLAALGVELVSTGGTSKALKDAGLAVKDVSDLTGFPEMMDGRVKTLHPAVHGGL LYLRDNPSHVKDAADHGIGAIDLIYVNLYPFEATVASGADFETCIENIDIGGPAMLRAAAKNGAFVAVCTDGGDVDAVLA QAEANAGAVSHALLRRLAAKTYARTAAYDAAISGWYAKQIGEDAPDWAAIGGKLQQSLRYGENPHQKAAFYVTGEKRPGV ATARQLQGKELSYNNINDTDAAYELIGELGSDKPAVAIIKHANPCGVALGPNIIEAYKAALACDPTSAFGGIVALNRPLD EETAKVITEIFTEVVIAPGADAAAEAIFAKKKNLRLLITDDLPDPATTGTFVKTVAGGFLLQDRDAGRIHLDDLEVVTKR APTAQELEDMLFAWRVAKHVKSNTIVYAKDGVTAGIGAGQMSRIDSARIAARKAQDAQETAGWSDPRTKGCVAASDAFFP FADGLLQAASAGATAVIQPGGSIRDDEVIAAADEAGLAMVFTGMRHFRH >Mature_528_residues SGAPVTLRRALISVSDKTGLIEQAKRLAALGVELVSTGGTSKALKDAGLAVKDVSDLTGFPEMMDGRVKTLHPAVHGGLL YLRDNPSHVKDAADHGIGAIDLIYVNLYPFEATVASGADFETCIENIDIGGPAMLRAAAKNGAFVAVCTDGGDVDAVLAQ AEANAGAVSHALLRRLAAKTYARTAAYDAAISGWYAKQIGEDAPDWAAIGGKLQQSLRYGENPHQKAAFYVTGEKRPGVA TARQLQGKELSYNNINDTDAAYELIGELGSDKPAVAIIKHANPCGVALGPNIIEAYKAALACDPTSAFGGIVALNRPLDE ETAKVITEIFTEVVIAPGADAAAEAIFAKKKNLRLLITDDLPDPATTGTFVKTVAGGFLLQDRDAGRIHLDDLEVVTKRA PTAQELEDMLFAWRVAKHVKSNTIVYAKDGVTAGIGAGQMSRIDSARIAARKAQDAQETAGWSDPRTKGCVAASDAFFPF ADGLLQAASAGATAVIQPGGSIRDDEVIAAADEAGLAMVFTGMRHFRH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=473, Percent_Identity=40.5919661733615, Blast_Score=273, Evalue=2e-73, Organism=Escherichia coli, GI1790439, Length=535, Percent_Identity=52.8971962616822, Blast_Score=513, Evalue=1e-146, Organism=Caenorhabditis elegans, GI71985564, Length=475, Percent_Identity=38.1052631578947, Blast_Score=266, Evalue=2e-71, Organism=Caenorhabditis elegans, GI71985574, Length=305, Percent_Identity=31.8032786885246, Blast_Score=118, Evalue=8e-27, Organism=Saccharomyces cerevisiae, GI6323768, Length=476, Percent_Identity=37.8151260504202, Blast_Score=264, Evalue=2e-71, Organism=Saccharomyces cerevisiae, GI6323056, Length=477, Percent_Identity=37.7358490566038, Blast_Score=260, Evalue=3e-70, Organism=Drosophila melanogaster, GI24649832, Length=472, Percent_Identity=38.5593220338983, Blast_Score=260, Evalue=1e-69,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 55402; Mature: 55271
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGAPVTLRRALISVSDKTGLIEQAKRLAALGVELVSTGGTSKALKDAGLAVKDVSDLTG CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHCCCEEECHHHHCC FPEMMDGRVKTLHPAVHGGLLYLRDNPSHVKDAADHGIGAIDLIYVNLYPFEATVASGAD CHHHHCCCHHEECHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEEEEEEECHHHHCCCCC FETCIENIDIGGPAMLRAAAKNGAFVAVCTDGGDVDAVLAQAEANAGAVSHALLRRLAAK HHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH TYARTAAYDAAISGWYAKQIGEDAPDWAAIGGKLQQSLRYGENPHQKAAFYVTGEKRPGV HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC ATARQLQGKELSYNNINDTDAAYELIGELGSDKPAVAIIKHANPCGVALGPNIIEAYKAA HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH LACDPTSAFGGIVALNRPLDEETAKVITEIFTEVVIAPGADAAAEAIFAKKKNLRLLITD HCCCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCEEEEEC DLPDPATTGTFVKTVAGGFLLQDRDAGRIHLDDLEVVTKRAPTAQELEDMLFAWRVAKHV CCCCCCCCCHHHHHHHCCEEEECCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHH KSNTIVYAKDGVTAGIGAGQMSRIDSARIAARKAQDAQETAGWSDPRTKGCVAASDAFFP CCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCH FADGLLQAASAGATAVIQPGGSIRDDEVIAAADEAGLAMVFTGMRHFRH HHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure SGAPVTLRRALISVSDKTGLIEQAKRLAALGVELVSTGGTSKALKDAGLAVKDVSDLTG CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHCCCEEECHHHHCC FPEMMDGRVKTLHPAVHGGLLYLRDNPSHVKDAADHGIGAIDLIYVNLYPFEATVASGAD CHHHHCCCHHEECHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEEEEEEECHHHHCCCCC FETCIENIDIGGPAMLRAAAKNGAFVAVCTDGGDVDAVLAQAEANAGAVSHALLRRLAAK HHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH TYARTAAYDAAISGWYAKQIGEDAPDWAAIGGKLQQSLRYGENPHQKAAFYVTGEKRPGV HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC ATARQLQGKELSYNNINDTDAAYELIGELGSDKPAVAIIKHANPCGVALGPNIIEAYKAA HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHH LACDPTSAFGGIVALNRPLDEETAKVITEIFTEVVIAPGADAAAEAIFAKKKNLRLLITD HCCCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCEEEEEC DLPDPATTGTFVKTVAGGFLLQDRDAGRIHLDDLEVVTKRAPTAQELEDMLFAWRVAKHV CCCCCCCCCHHHHHHHCCEEEECCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHH KSNTIVYAKDGVTAGIGAGQMSRIDSARIAARKAQDAQETAGWSDPRTKGCVAASDAFFP CCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCH FADGLLQAASAGATAVIQPGGSIRDDEVIAAADEAGLAMVFTGMRHFRH HHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA