| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
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The map label for this gene is uvrA [H]
Identifier: 114332410
GI number: 114332410
Start: 2575500
End: 2578337
Strand: Reverse
Name: uvrA [H]
Synonym: Neut_2459
Alternate gene names: 114332410
Gene position: 2578337-2575500 (Counterclockwise)
Preceding gene: 114332415
Following gene: 114332409
Centisome position: 96.89
GC content: 51.23
Gene sequence:
>2838_bases ATGGAATTCATCAGGATCCGTGGTGCACGGACACATAATCTTAAAAACGTAGACCTTGATCTGCCGCGCAACCGGCTGAT TGTGATCACAGGGCTATCCGGCTCCGGCAAATCTTCGCTGGCTTTCGATACGCTGTATGCGGAAGGCCAGCGGCGTTATG TTGAATCACTTTCTGCGTATGCACGGCAGTTTTTGCAATTGATGGAAAAACCGGATGTCGATCTGATCGAAGGGTTATCA CCCGCCATTTCCATTGAGCAAAAAGCCACTTCGCACAACCCGCGTTCCACCGTGGGGACAGTCACCGAAATACATGATTA TCTGCGCTTGCTGTTTGCCCGAACGGGAGAACCGCATTGCCCGGAGCATGGCATTGCGCTGGCGGCACAAAGTGTTTCGC AAATGGTTGATCAGGTACTGGCATTGCCGGCAGATACCCGGTTGATGATTCTTTCACCAGTAATAACCGGGCGCAAGGGC GAACAGCTGGAATTGTTTGATCAGCTGCGTTCGCAAGGATTCGTGCGCGTCCGGCTGGATGGGGAAGTGCATGATATCGA CGCCCTGCCGAAGTTGCAGAAAAATAGGAAGCATACGATCGAAGTGGTGATAGATCGTCTCAAGATTTCACTGGAGATCA AACAGCGCTTAGCAGAATCTTTTGAAACAGCCTTGCACTATGCTGAAGGCAAGGCAATAGCGGTAGAAATGGATACCGGT AAGGAATACCTATTCTCTGCCAGATTCAGTTGTCCGGTATGTAGCTATGCCTTATCCGAGCTTGAACCGCGTCTATTTTC CTTCAATAATCCTGCTGGTGCGTGTCATCGCTGTGACGGGCTGGGGCAGATCACTTTTTTCGATCCGGCGCGGGTGGTGG CTTTTCCGTATTTATCACTGGCCACAGGCGCTATCAAAAGTTGGGATCGGCGTAATCAGTTCTATTTCCAGATGTTGCAG GCAGTGGCAACGCATTACCACTTCAATCTTGAAGTTCCATTCGAGCAATTGAGTGAGGCTGCACAACAGGTTGTGTTGTA TGGTTCCGGCAAGGAAAAAGTCACCTTTACTTACTTCAATGAGCAAGGCAAAGCCAATCAGCAAACGCATGTGTTCGAGG GCATTATCCCCAGCCTGGAGCGCCGTTATCGGGAAACTGAATCACAAACTGTACGCGAAGAGCTGGCCAAATTTATCAAT GCGCGCGTCTGTCCGGAATGTGAAGGTACACGCCTGCGCCGTGAAGCCCGCCACGTTACAGTGAATGGTGAGACAATTTT TGCAATCAGTGCCTGGCCACTGCGGCAGGCCAAACAGTTTTTTGATGAAATGAAGCTGGAAGGCCATAAGCAGGCCATCG CAGAGCGTATTGTCAAGGAAATATCCAGCCGTCTGCAGTTTCTCAACAATGTCGGGCTGGACTATCTTTCACTTAATCGA TCCGCCGATACGCTTTCCGGCGGAGAGGCGCAGCGTATTCGCCTTGCCAGCCAGATCGGCTCTGGCTTGACCGGTGTCAT GTATGTGCTGGATGAACCTTCGATTGGTCTGCATCAGCGTGATAATGAACGTTTACTGGAAACCCTCAAACATCTACGCG ATCTCGGCAATAGCGTTATCGTGGTGGAGCATGATCAGGACGCCATCCTGCTGGCAGATCATGTCGTCGATATGGGCCCC GGCGCCGGTGAACATGGTGGACGTGTGGTTGCAGAAGGCACGCCCGCAGCGATTCAGGAAAATCCTGCCTCATTGACCGG GCAGTATCTTTCCGGAAAGTTAGCCATTGCTATCCCAGCTGCGCGTACACCTCCTGATCCGGAAAGAATACTGATCATAC GCGGAGCAAGTGGTAACAATCTCAAACAGGTTGCGCTTGATTTACCGGTCGGACTGCTGGTGTGTGTGACGGGTGTTTCA GGCTCGGGAAAATCCACTTTGATTAACGATACGCTGTATCGCGCTGTGGCGCGGCATTTGTACGGCAGCTTGACTGACCC GGCGGCTTACCGGGAAATTGATGGGCTGGGCTTTTTCGATAAGGTGATTGATATCAACCAAAGCCCGATCGGACGTACTC CCCGTTCCAATCCCGCCACCTACACCGGCCTGTTCACCCCGGTGCGTGAATTATTCGCCGGTGTGCCGCAAGCCAGAGAA CGCGGTTATCTGCCAGGCCGATTTTCGTTTAATGTCAAAGGCGGACGCTGTGAAGCCTGCCAGGGGGATGGTGTCATTAA GGTGGAAATGCATTTTTTGCCGGATATTTATGTTGCCTGCGATGTGTGTCATGGACAGCGTTACAACCGGGAAACATTGG AGATTCAATACAAAGGTAAAAATATCCACGAAATTCTGCAAATGACCGTTGAAAACGCACATATATTTTTTGAAGCAGTG CCGGTGATTGCCCGCAAGCTGCAAACCTTGCTGGATGTGGGACTGGGATATATCACGCTGGGACAATCTGCCACCACGCT ATCTGGTGGTGAGGCGCAGCGCGTTAAACTTTCTCTGGAATTATCCAAACGTGATACTGGCCGCACACTCTATATTCTGG ATGAGCCGACGACTGGTCTGCATTTTCAGGATATCGATCTGTTGCTCAAAGTGCTACACCGCCTGCGTGATAACGGGAAT ACTGTGGTTATTATCGAACATAATCTGGACGTTATTAAAACGGCTGACTGGATTATTGATCTTGGTCCGGAAGGTGGTGC CGGAGGCGGTAGAATCATCGCCGAGGGCACACCGGAAGCCGTGGCAGCGATGCCTGGCAGTTTTACCGGACAGTTTCTCC AGCCATTGCTTTCCAGTACTACCCAAACCTCTTCATGA
Upstream 100 bases:
>100_bases GTTCTGGATGCAGGTGTTGCGGACATGAAGCGTAATTGTGAATTGTGATAAAAGCGGGAAGTTGGGTATATTATCAGGTT GACTCTTTCTTAGGTAGCCG
Downstream 100 bases:
>100_bases ATCCGCGCGAACTTCTGCTTGATAGTTTTCATGCTGCTGTTAATGCAGCTGATCCGCTGAAAATTGTGCCTTGTCATCTG CCTGAACCGCCACGCGGGAA
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 945; Mature: 945
Protein sequence:
>945_residues MEFIRIRGARTHNLKNVDLDLPRNRLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARTGEPHCPEHGIALAAQSVSQMVDQVLALPADTRLMILSPVITGRKG EQLELFDQLRSQGFVRVRLDGEVHDIDALPKLQKNRKHTIEVVIDRLKISLEIKQRLAESFETALHYAEGKAIAVEMDTG KEYLFSARFSCPVCSYALSELEPRLFSFNNPAGACHRCDGLGQITFFDPARVVAFPYLSLATGAIKSWDRRNQFYFQMLQ AVATHYHFNLEVPFEQLSEAAQQVVLYGSGKEKVTFTYFNEQGKANQQTHVFEGIIPSLERRYRETESQTVREELAKFIN ARVCPECEGTRLRREARHVTVNGETIFAISAWPLRQAKQFFDEMKLEGHKQAIAERIVKEISSRLQFLNNVGLDYLSLNR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNERLLETLKHLRDLGNSVIVVEHDQDAILLADHVVDMGP GAGEHGGRVVAEGTPAAIQENPASLTGQYLSGKLAIAIPAARTPPDPERILIIRGASGNNLKQVALDLPVGLLVCVTGVS GSGKSTLINDTLYRAVARHLYGSLTDPAAYREIDGLGFFDKVIDINQSPIGRTPRSNPATYTGLFTPVRELFAGVPQARE RGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVACDVCHGQRYNRETLEIQYKGKNIHEILQMTVENAHIFFEAV PVIARKLQTLLDVGLGYITLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDNGN TVVIIEHNLDVIKTADWIIDLGPEGGAGGGRIIAEGTPEAVAAMPGSFTGQFLQPLLSSTTQTSS
Sequences:
>Translated_945_residues MEFIRIRGARTHNLKNVDLDLPRNRLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARTGEPHCPEHGIALAAQSVSQMVDQVLALPADTRLMILSPVITGRKG EQLELFDQLRSQGFVRVRLDGEVHDIDALPKLQKNRKHTIEVVIDRLKISLEIKQRLAESFETALHYAEGKAIAVEMDTG KEYLFSARFSCPVCSYALSELEPRLFSFNNPAGACHRCDGLGQITFFDPARVVAFPYLSLATGAIKSWDRRNQFYFQMLQ AVATHYHFNLEVPFEQLSEAAQQVVLYGSGKEKVTFTYFNEQGKANQQTHVFEGIIPSLERRYRETESQTVREELAKFIN ARVCPECEGTRLRREARHVTVNGETIFAISAWPLRQAKQFFDEMKLEGHKQAIAERIVKEISSRLQFLNNVGLDYLSLNR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNERLLETLKHLRDLGNSVIVVEHDQDAILLADHVVDMGP GAGEHGGRVVAEGTPAAIQENPASLTGQYLSGKLAIAIPAARTPPDPERILIIRGASGNNLKQVALDLPVGLLVCVTGVS GSGKSTLINDTLYRAVARHLYGSLTDPAAYREIDGLGFFDKVIDINQSPIGRTPRSNPATYTGLFTPVRELFAGVPQARE RGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVACDVCHGQRYNRETLEIQYKGKNIHEILQMTVENAHIFFEAV PVIARKLQTLLDVGLGYITLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDNGN TVVIIEHNLDVIKTADWIIDLGPEGGAGGGRIIAEGTPEAVAAMPGSFTGQFLQPLLSSTTQTSS >Mature_945_residues MEFIRIRGARTHNLKNVDLDLPRNRLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARTGEPHCPEHGIALAAQSVSQMVDQVLALPADTRLMILSPVITGRKG EQLELFDQLRSQGFVRVRLDGEVHDIDALPKLQKNRKHTIEVVIDRLKISLEIKQRLAESFETALHYAEGKAIAVEMDTG KEYLFSARFSCPVCSYALSELEPRLFSFNNPAGACHRCDGLGQITFFDPARVVAFPYLSLATGAIKSWDRRNQFYFQMLQ AVATHYHFNLEVPFEQLSEAAQQVVLYGSGKEKVTFTYFNEQGKANQQTHVFEGIIPSLERRYRETESQTVREELAKFIN ARVCPECEGTRLRREARHVTVNGETIFAISAWPLRQAKQFFDEMKLEGHKQAIAERIVKEISSRLQFLNNVGLDYLSLNR SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNERLLETLKHLRDLGNSVIVVEHDQDAILLADHVVDMGP GAGEHGGRVVAEGTPAAIQENPASLTGQYLSGKLAIAIPAARTPPDPERILIIRGASGNNLKQVALDLPVGLLVCVTGVS GSGKSTLINDTLYRAVARHLYGSLTDPAAYREIDGLGFFDKVIDINQSPIGRTPRSNPATYTGLFTPVRELFAGVPQARE RGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVACDVCHGQRYNRETLEIQYKGKNIHEILQMTVENAHIFFEAV PVIARKLQTLLDVGLGYITLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDNGN TVVIIEHNLDVIKTADWIIDLGPEGGAGGGRIIAEGTPEAVAAMPGSFTGQFLQPLLSSTTQTSS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=69.5744680851064, Blast_Score=1338, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104442; Mature: 104442
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFIRIRGARTHNLKNVDLDLPRNRLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARTGEPHC HHHHHHHHCCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC PEHGIALAAQSVSQMVDQVLALPADTRLMILSPVITGRKGEQLELFDQLRSQGFVRVRLD CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEC GEVHDIDALPKLQKNRKHTIEVVIDRLKISLEIKQRLAESFETALHYAEGKAIAVEMDTG CCEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC KEYLFSARFSCPVCSYALSELEPRLFSFNNPAGACHRCDGLGQITFFDPARVVAFPYLSL CHHHEECCCCCCHHHHHHHHCCCHHEECCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHH ATGAIKSWDRRNQFYFQMLQAVATHYHFNLEVPFEQLSEAAQQVVLYGSGKEKVTFTYFN HHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHEEEEEECCCCEEEEEEEC EQGKANQQTHVFEGIIPSLERRYRETESQTVREELAKFINARVCPECEGTRLRREARHVT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEE VNGETIFAISAWPLRQAKQFFDEMKLEGHKQAIAERIVKEISSRLQFLNNVGLDYLSLNR ECCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNERLLETLKHLRDLGNSVI CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDQDAILLADHVVDMGPGAGEHGGRVVAEGTPAAIQENPASLTGQYLSGKLAIAIPA EEECCCCEEEEEEHHHCCCCCCCCCCCEEEECCCCCHHCCCCCHHCHHHHCCEEEEEECC ARTPPDPERILIIRGASGNNLKQVALDLPVGLLVCVTGVSGSGKSTLINDTLYRAVARHL CCCCCCCCEEEEEECCCCCCHHHHEECCCCEEEHEEECCCCCCCCHHHHHHHHHHHHHHH YGSLTDPAAYREIDGLGFFDKVIDINQSPIGRTPRSNPATYTGLFTPVRELFAGVPQARE CCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHH RGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVACDVCHGQRYNRETLEIQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCEEHEEEHHCCCCCCCCEEEEEECCC NIHEILQMTVENAHIFFEAVPVIARKLQTLLDVGLGYITLGQSATTLSGGEAQRVKLSLE CHHHHHHHHHHCHHHEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDNGNTVVIIEHNLDVIKTADWIID ECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEE LGPEGGAGGGRIIAEGTPEAVAAMPGSFTGQFLQPLLSSTTQTSS ECCCCCCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MEFIRIRGARTHNLKNVDLDLPRNRLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARTGEPHC HHHHHHHHCCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC PEHGIALAAQSVSQMVDQVLALPADTRLMILSPVITGRKGEQLELFDQLRSQGFVRVRLD CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEC GEVHDIDALPKLQKNRKHTIEVVIDRLKISLEIKQRLAESFETALHYAEGKAIAVEMDTG CCEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC KEYLFSARFSCPVCSYALSELEPRLFSFNNPAGACHRCDGLGQITFFDPARVVAFPYLSL CHHHEECCCCCCHHHHHHHHCCCHHEECCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHH ATGAIKSWDRRNQFYFQMLQAVATHYHFNLEVPFEQLSEAAQQVVLYGSGKEKVTFTYFN HHHHHHHHHHCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHEEEEEECCCCEEEEEEEC EQGKANQQTHVFEGIIPSLERRYRETESQTVREELAKFINARVCPECEGTRLRREARHVT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEE VNGETIFAISAWPLRQAKQFFDEMKLEGHKQAIAERIVKEISSRLQFLNNVGLDYLSLNR ECCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC SADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNERLLETLKHLRDLGNSVI CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDQDAILLADHVVDMGPGAGEHGGRVVAEGTPAAIQENPASLTGQYLSGKLAIAIPA EEECCCCEEEEEEHHHCCCCCCCCCCCEEEECCCCCHHCCCCCHHCHHHHCCEEEEEECC ARTPPDPERILIIRGASGNNLKQVALDLPVGLLVCVTGVSGSGKSTLINDTLYRAVARHL CCCCCCCCEEEEEECCCCCCHHHHEECCCCEEEHEEECCCCCCCCHHHHHHHHHHHHHHH YGSLTDPAAYREIDGLGFFDKVIDINQSPIGRTPRSNPATYTGLFTPVRELFAGVPQARE CCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCHHH RGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVACDVCHGQRYNRETLEIQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCEEHEEEHHCCCCCCCCEEEEEECCC NIHEILQMTVENAHIFFEAVPVIARKLQTLLDVGLGYITLGQSATTLSGGEAQRVKLSLE CHHHHHHHHHHCHHHEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIDLLLKVLHRLRDNGNTVVIIEHNLDVIKTADWIID ECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEE LGPEGGAGGGRIIAEGTPEAVAAMPGSFTGQFLQPLLSSTTQTSS ECCCCCCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9197406 [H]