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The map label for this gene is yncD [H]

Identifier: 114332057

GI number: 114332057

Start: 2215450

End: 2217747

Strand: Direct

Name: yncD [H]

Synonym: Neut_2092

Alternate gene names: 114332057

Gene position: 2215450-2217747 (Clockwise)

Preceding gene: 114332056

Following gene: 114332061

Centisome position: 83.25

GC content: 52.44

Gene sequence:

>2298_bases
ATGAAATCTATTGCCGGATTATTTTCGTTACTGCTTCTGCTATGGGCGAATACGGCCAATGCGCAAAATGACATCCCCTA
TTCCTTCAATCTTCCTGCACAGCCTCTTTCTTCCACACTGAATCACCTGGCCAATATCACTGGCATCAAGCTGATTTATG
CGGATGAAATCACCCGAAATCATCTTTCTCCACCTCTACACGGCAACTTCACACTGGCAGAAGCATTGAACCAGGTACTG
AATAAAAACCGGTTGAAGTACGAGATGGTCGATAACAGCATGGTCGTCATCAGCCAGGCTGCTGCCAATACGGTTTTACC
TGAAATCACCATCACCACTGATTCATCCGCGGCCGGTAACGAAGCCTCACTAACCGTTCCGAATACCGCACAGGCAACGG
CCAATATCCAGTACACACCCGGTGCCGTCGAAGTCATATCCGATGCCCGATTCAAAAGTACACCGGCACAAACCATCAAG
GACATCGTCGGCTGGATACCCGGTGTCATCGCCCAACCCAAATCGAATATCGATAACCGGATATCGATCCGCGGCTCCGG
ATTAACGCGCAACTATGGCAACCGTGGCATCAATATGTATATGGACGGCATCCCGATCAACACTGCTGACGGCCTGTTCG
ATGTCTTCGAAATCGATCCAGGTGCTTACCGCTACGTCGAAGTGTTCAAGGGTGCCAATGCACTGCGTTACGGAGCCAAC
TCTCTCGGTGGCGCAATCAACCTCGTCACACCGACAGGGTATGATGCTTCCCGGTTCAGCGGGCGAGTGGATACAGGCAG
TTTCGGCTATATGAAAGGACAGGTGAGCACGAGCGGAATCCACGGCCCGCATGATTATTTCATCACTGCATCGGCACAGC
GCGAGGATGGCTATCGTGATCACAGCAATGGCCATATGGTACTCGGTAGTGCCAACTTCGGTTATCGATTCTTACCGGAT
GCCGAGACACGCTTTTACCTGAACGCAAATACATGGCGCCAGCGTTTACCAGGCGAGCTGACCAAGCGCATGGTGCTGGA
TTCACCACGCAGCGCCGATCCCGAGTTCGTACGGCAGGATCAGCAACGCAACATCGACTCAGTGCGGCTCGCCAACAAGA
CTACGCTACGCTTCGGCCCCACCACGGTCGACTTTGGTCTCTTTGGCCACCATCGCCATGTGGATCATCCTATCTACCGG
TACCTGGACTACTATGTCCATGACTACGGCGGCTTCGCGCGTGCAACCGATGACCGTCTGATCGCCGGCTTCCGCAACCG
CTTCGTCGCGGGTGCAAACGTTCATAACGGCAAAATCAACTACAAAGAATATATCAACCCGGGAGATGCGGTGAAAAGTG
CACTCGCCATGTCCACGGTAGATAAATCACAGAACTATTCAATCTATGTGGAAAACAGTTTCTACTTCCTGCAGAATGTC
GCGCTGGTTGCTGGCGGGCAGTTCCTGCATGCGATTCGCGACCGGAATGACCGTTTCCTGGCGGATGGCGATCAGTCGGG
CCGCCGTGCTTACAGCATCTTCAGCCCCAGAGGAGGATTGTTGTGGGACATTGCTCCCGATGTACAGATCTTTGCCAATA
TCTCACGCAGTGCCGAAGTACCGACTTTCGACACGAACACCTTTATGACACCCGCTAGTTCGGAACTCGATGCCCAGACT
GCTACCACCTATGAAATCGGAACACGCGGGCACAGAGCCGATTTCAAATGGGATATCGCCTTCTATCGCGCCCATATCAG
AAATGAGCTGCAATGCCTGAGAACGTCGCCGTTCAGCCCATGTACGGTAGTCAATGCAGATCGTACCGTACATCAGGGGA
TCGAACTGGGATTCGGTGCCGCATTTCTCAAAGGAATCGCCGCCCGGAAAGATCTTCTCTGGCTCGACATAGCCTACACC
TACAACGATTTCTTTTTTGACAATGACACCCTTTATGGAAACAACAAGCTGCCCGGCGTACCACCCCACTACCTGCGCGC
AGAAGTGCTCTACAAATATCCGAATGGATTCCACGCCGGTCCAAATGTGGAATGGATGCCACGAGCCTACTACGCTGATA
ATGCTAATAATCTCTCCATTGGCTCATACGCGCTCCTAAACTTCAGAATCAGCTATGACCCAGGTAAAAAATGGTCCGGT
TACCTCGAAGGACGTAATCTACTTGATACCCGCTACATCTCAACCACGATCACCTCCGGCACGGCTGATGCCACCTCCGC
ACTCTTCAATTCCGGCTATGGTCGGGCAATTTACGGTGGCATACGGTTCAACTGGTGA

Upstream 100 bases:

>100_bases
CCGGATAAATAAAAAAATGTGACCAGTTCATCGTGTTTTTCACGTCTTACCAGACAGGACATCAGAAACCTTTATACCTT
CCTGACTGGAGAAAAACACC

Downstream 100 bases:

>100_bases
AAACAAAAATTTCAAATCTATCGTACAGGTTGTACAGCTTCACACTGCTCACCAATCCAGCGACCGGTTGTGTCAGCAGA
TACATAAACCGGCATGTCCT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL
NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK
DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN
SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD
AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR
YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV
ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT
ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT
YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG
YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW

Sequences:

>Translated_765_residues
MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL
NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK
DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN
SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD
AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR
YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV
ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT
ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT
YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG
YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW
>Mature_765_residues
MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL
NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK
DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN
SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD
AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR
YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV
ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT
ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT
YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG
YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=677, Percent_Identity=25.8493353028065, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI1790743, Length=238, Percent_Identity=28.1512605042017, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 84943; Mature: 84943

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRN
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHH
HLSPPLHGNFTLAEALNQVLNKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGN
HCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCC
EASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIKDIVGWIPGVIAQPKSNIDNR
CCEEECCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE
ISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN
EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCHHHCCCH
SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRD
HCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECEEECCCCCCCCCEEEEEECCCCCCCCC
HSNGHMVLGSANFGYRFLPDAETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQD
CCCCEEEEEECCCCEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
QQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYRYLDYYVHDYGGFARATDDRL
HHCCCCCEEECCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHH
IAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV
HHHHHHCEEECCCCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHH
ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEV
HHHHCCHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCC
PTFDTNTFMTPASSELDAQTATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSP
CCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
CTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYTYNDFFFDNDTLYGNNKLPGV
EEEEECCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECEEEECCCEEECCCCCCCC
PPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG
CHHHHEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEECEEEEEEEEEEECCCCCCCC
YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW
EECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEECEEECC
>Mature Secondary Structure
MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRN
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHH
HLSPPLHGNFTLAEALNQVLNKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGN
HCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCC
EASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIKDIVGWIPGVIAQPKSNIDNR
CCEEECCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE
ISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN
EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCHHHCCCH
SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRD
HCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECEEECCCCCCCCCEEEEEECCCCCCCCC
HSNGHMVLGSANFGYRFLPDAETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQD
CCCCEEEEEECCCCEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
QQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYRYLDYYVHDYGGFARATDDRL
HHCCCCCEEECCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHH
IAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV
HHHHHHCEEECCCCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHH
ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEV
HHHHCCHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCC
PTFDTNTFMTPASSELDAQTATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSP
CCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
CTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYTYNDFFFDNDTLYGNNKLPGV
EEEEECCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECEEEECCCEEECCCCCCCC
PPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG
CHHHHEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEECEEEEEEEEEEECCCCCCCC
YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW
EECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]