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The map label for this gene is ubiD

Identifier: 114331125

GI number: 114331125

Start: 1166591

End: 1168054

Strand: Reverse

Name: ubiD

Synonym: Neut_1127

Alternate gene names: 114331125

Gene position: 1168054-1166591 (Counterclockwise)

Preceding gene: 114331126

Following gene: 114331123

Centisome position: 43.89

GC content: 51.91

Gene sequence:

>1464_bases
ATGAAATATAACGATCTACGCGATTTTCTCGCACAGCTTGAGCTTCGTGGAGAATTGAAACGTGTTGACATTGAAGTTTC
TCCCCATCTGGAAATGACGGAAATCTGTGATCGCCTGCTTAAACAGGCCGGTCCGGCAGTGCTGTTTGAACGACCGGCTG
GGCATACTATTCCAGTATTGGGTAACCTGTTTGGCACCCCGGAACGAGTGGCGCTGGGCATGGGACAGACATCCGTTTCT
GCCTTGCGTGAAGTGGGAAAACTACTGGCTTACCTCAAGGAACCCGAACCCCCAAAAGGGCTACGCGATGCATGGGACAA
ACTGCCGATATTAAAGCAGGTGCTCAACATGCCTCCCCGGGAATTGGCCAGCGCTCCCTGCCAGGAAATAGTGTGGGAAG
GCGCTGATGTCGATCTGAGCAAACTACCCATTCAAACCTGCTGGCCGGGCGATGTGGCATCACTGATTACCTGGGGACTT
ACAGTCACACGCGGCCCGCATAAATCCAGACAAAATCTGGGAATTTATCGACAACAGGTCATTGCTCCCAACAAGGTAAT
TATGCGCTGGCTGGCACATCGCGGTGGCGCGCTGGATTACCGTGATTTTTGTCAGATCAATCCCGGGGAACCCTACCCTG
TTGCGGTTGCGCTGGGTGCTGATCCTGCAACTATTCTCGGTGCAGTGACCCCCGTTCCCGATAGTTTAAGCGAATACCAG
TTTGCCGGCTTGTTACGTGGCGCAAAAACTGAAATCGTCAAATGTCTGACGCATGATCTGCAAGTCCCCGCCAGCGCGGA
AATTGTGCTGGAAGGCTATATTTACCCGAATGAAACGGCATTGGAGGGGCCTTATGGCGACCACACCGGCTATTACAACG
AGCAGGAAACCTTTCCAGTGTTTACTATTGAACGGATCACCATGCGCCGCGATCCGATTTACCACTCCACCTACACTGGC
AAACCACCGGATGAACCGGCCATTCTTGGCGTCGCCCTCAATGAAGTATTCGTACCATTGTTGCAAAAACAGTTTACCGA
GATTACCGATTTTTACCTGCCACCAGAAGGCTGTTCTTACCGGCTGGCCGTAGTCAGTATGAAAAAACAGTATCCCGGCC
ACGCCAAGCGTGTCATGTTCGGTATCTGGAGTTTTCTGCGCCAGTTCATGTACACCAAGTTCATCATCGTGACCGATGAC
GATATCAACATCCGCGACTGGAAAGAAGTCATCTGGGCGATAACCACTCGAGTTGATCCGGTACGCGACACTCTGATTGT
GGAGAACACTCCGATTGATTATCTTGATTTTGCCAGCCCTGTATCCGGGCTCGGCAGCAAAATGGGACTGGATGCCACTA
ACAAATGGCCAGGCGAAACATCCCGTGAATGGGGTCGCGTCATCGAAATGGATGCGGCCGTCAAAGCCAGAGTCGATCAC
CTCTGGCAGCAATTGCTATTTTGA

Upstream 100 bases:

>100_bases
TGATTTGAGTTGATCAACCAATCTCACCACGAATCTGGCTCAATGCTGCGCTGCACCAGCGTACTCTGTTTAATTCATTC
ACAAAAACTGGATCTGTTTT

Downstream 100 bases:

>100_bases
CCATTCAGCCGTAGAGATGGAACTACAGCTCCCTTCACTCCCCGAAAAAGTAGTCGGACTTCATAATCAGGTCTGCGCAA
ACTGTAATCTACCGAGTATG

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKYNDLRDFLAQLELRGELKRVDIEVSPHLEMTEICDRLLKQAGPAVLFERPAGHTIPVLGNLFGTPERVALGMGQTSVS
ALREVGKLLAYLKEPEPPKGLRDAWDKLPILKQVLNMPPRELASAPCQEIVWEGADVDLSKLPIQTCWPGDVASLITWGL
TVTRGPHKSRQNLGIYRQQVIAPNKVIMRWLAHRGGALDYRDFCQINPGEPYPVAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIYPNETALEGPYGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRLAVVSMKKQYPGHAKRVMFGIWSFLRQFMYTKFIIVTDD
DINIRDWKEVIWAITTRVDPVRDTLIVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRVIEMDAAVKARVDH
LWQQLLF

Sequences:

>Translated_487_residues
MKYNDLRDFLAQLELRGELKRVDIEVSPHLEMTEICDRLLKQAGPAVLFERPAGHTIPVLGNLFGTPERVALGMGQTSVS
ALREVGKLLAYLKEPEPPKGLRDAWDKLPILKQVLNMPPRELASAPCQEIVWEGADVDLSKLPIQTCWPGDVASLITWGL
TVTRGPHKSRQNLGIYRQQVIAPNKVIMRWLAHRGGALDYRDFCQINPGEPYPVAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIYPNETALEGPYGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRLAVVSMKKQYPGHAKRVMFGIWSFLRQFMYTKFIIVTDD
DINIRDWKEVIWAITTRVDPVRDTLIVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRVIEMDAAVKARVDH
LWQQLLF
>Mature_487_residues
MKYNDLRDFLAQLELRGELKRVDIEVSPHLEMTEICDRLLKQAGPAVLFERPAGHTIPVLGNLFGTPERVALGMGQTSVS
ALREVGKLLAYLKEPEPPKGLRDAWDKLPILKQVLNMPPRELASAPCQEIVWEGADVDLSKLPIQTCWPGDVASLITWGL
TVTRGPHKSRQNLGIYRQQVIAPNKVIMRWLAHRGGALDYRDFCQINPGEPYPVAVALGADPATILGAVTPVPDSLSEYQ
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIYPNETALEGPYGDHTGYYNEQETFPVFTIERITMRRDPIYHSTYTG
KPPDEPAILGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRLAVVSMKKQYPGHAKRVMFGIWSFLRQFMYTKFIIVTDD
DINIRDWKEVIWAITTRVDPVRDTLIVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRVIEMDAAVKARVDH
LWQQLLF

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=485, Percent_Identity=75.4639175257732, Blast_Score=780, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=25.8928571428571, Blast_Score=132, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_NITEC (Q0AH00)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_747347.1
- ProteinModelPortal:   Q0AH00
- SMR:   Q0AH00
- STRING:   Q0AH00
- GeneID:   4272409
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_1127
- NMPDR:   fig|335283.3.peg.990
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   Q0AH00
- ProtClustDB:   CLSK585971
- BioCyc:   NEUT335283:NEUT_1127-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 54758; Mature: 54758

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYNDLRDFLAQLELRGELKRVDIEVSPHLEMTEICDRLLKQAGPAVLFERPAGHTIPVL
CCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHH
GNLFGTPERVALGMGQTSVSALREVGKLLAYLKEPEPPKGLRDAWDKLPILKQVLNMPPR
HHHCCCHHHHEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHCCCHH
ELASAPCQEIVWEGADVDLSKLPIQTCWPGDVASLITWGLTVTRGPHKSRQNLGIYRQQV
HHHCCCHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCHHHCCHHHHHH
IAPNKVIMRWLAHRGGALDYRDFCQINPGEPYPVAVALGADPATILGAVTPVPDSLSEYQ
CCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHH
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIYPNETALEGPYGDHTGYYNEQETFPV
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
FTIERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFTEITDFYLPPEGCSY
EEEEHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RLAVVSMKKQYPGHAKRVMFGIWSFLRQFMYTKFIIVTDDDINIRDWKEVIWAITTRVDP
EEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
VRDTLIVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRVIEMDAAVKARVDH
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCEEEHHHHHHHHHHH
LWQQLLF
HHHHHCC
>Mature Secondary Structure
MKYNDLRDFLAQLELRGELKRVDIEVSPHLEMTEICDRLLKQAGPAVLFERPAGHTIPVL
CCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHH
GNLFGTPERVALGMGQTSVSALREVGKLLAYLKEPEPPKGLRDAWDKLPILKQVLNMPPR
HHHCCCHHHHEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHCCCHH
ELASAPCQEIVWEGADVDLSKLPIQTCWPGDVASLITWGLTVTRGPHKSRQNLGIYRQQV
HHHCCCHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCHHHCCHHHHHH
IAPNKVIMRWLAHRGGALDYRDFCQINPGEPYPVAVALGADPATILGAVTPVPDSLSEYQ
CCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHH
FAGLLRGAKTEIVKCLTHDLQVPASAEIVLEGYIYPNETALEGPYGDHTGYYNEQETFPV
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
FTIERITMRRDPIYHSTYTGKPPDEPAILGVALNEVFVPLLQKQFTEITDFYLPPEGCSY
EEEEHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RLAVVSMKKQYPGHAKRVMFGIWSFLRQFMYTKFIIVTDDDINIRDWKEVIWAITTRVDP
EEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCC
VRDTLIVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETSREWGRVIEMDAAVKARVDH
CCCEEEEECCCCCHHHHHCHHHHCCHHCCCCCCCCCCCCCCHHHCCEEEHHHHHHHHHHH
LWQQLLF
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA