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The map label for this gene is flhD

Identifier: 114330744

GI number: 114330744

Start: 744292

End: 744609

Strand: Direct

Name: flhD

Synonym: Neut_0729

Alternate gene names: 114330744

Gene position: 744292-744609 (Clockwise)

Preceding gene: 114330743

Following gene: 114330745

Centisome position: 27.97

GC content: 44.65

Gene sequence:

>318_bases
ATGGGGACAAATCAGATTTTAGACGAAATCAGGGAAGTCAATCTCAGTTATTTGCTGCTGGCTCAACAAATGCTGCGTGA
AGACAGGGTTGCTGCAATGTACCGTTTAGGTATTGACGAGGATATAGCGGATATTCTGATCAAGCTGACTAACAGCCAGT
TATTGAAAATGGCTGGATCCAACATGCTGTTGTGCCGGTTCCGTTTTGATGACAGCCTGATTGCAGAAATACTTACAAGT
CATAAACAGGATCGCGCACTGACACAATCCCACGCTGCAATACTCATGGCAGGGCAACCTGCTGAAAAAATTTCCTGA

Upstream 100 bases:

>100_bases
GTAACAGCCCGCTTTCCCCAATTTGCTCCCTGGTTAAAAATGCTTACATCATTTTTGAGAACAACCCGGTTTAATTTGTA
TATTAGAAGGAGCAGTAAAA

Downstream 100 bases:

>100_bases
GCACCCGTATAGAGGAGGAAGTAATCATGAAAGTGAAAAGTATTTTATCCGAAGGTAAACAGATTCAGCTTGCCACTGAA
TTGGTCCGGCTGGGTGCAAG

Product: transcriptional activator FlhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGSNMLLCRFRFDDSLIAEILTS
HKQDRALTQSHAAILMAGQPAEKIS

Sequences:

>Translated_105_residues
MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGSNMLLCRFRFDDSLIAEILTS
HKQDRALTQSHAAILMAGQPAEKIS
>Mature_104_residues
GTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGSNMLLCRFRFDDSLIAEILTSH
KQDRALTQSHAAILMAGQPAEKIS

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family

Homologues:

Organism=Escherichia coli, GI145693151, Length=111, Percent_Identity=39.6396396396396, Blast_Score=83, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLHD_NITEC (Q0AI31)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746966.1
- ProteinModelPortal:   Q0AI31
- SMR:   Q0AI31
- STRING:   Q0AI31
- GeneID:   4273023
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0729
- NMPDR:   fig|335283.3.peg.2443
- eggNOG:   NOG07455
- HOGENOM:   HBG367151
- OMA:   MGTSELL
- PhylomeDB:   Q0AI31
- ProtClustDB:   PRK02909
- BioCyc:   NEUT335283:NEUT_0729-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_00725
- InterPro:   IPR007911
- ProDom:   PD015582

Pfam domain/function: PF05247 FlhD; SSF63592 Flagellar_transcriptional_act

EC number: NA

Molecular weight: Translated: 11833; Mature: 11702

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGS
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
NMLLCRFRFDDSLIAEILTSHKQDRALTQSHAAILMAGQPAEKIS
CEEEEEEECCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCHHHCC
>Mature Secondary Structure 
GTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGS
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
NMLLCRFRFDDSLIAEILTSHKQDRALTQSHAAILMAGQPAEKIS
CEEEEEEECCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA