Definition Shewanella sp. MR-4 chromosome, complete genome.
Accession NC_008321
Length 4,706,287

Click here to switch to the map view.

The map label for this gene is 113969409

Identifier: 113969409

GI number: 113969409

Start: 1247180

End: 1248019

Strand: Direct

Name: 113969409

Synonym: Shewmr4_1065

Alternate gene names: NA

Gene position: 1247180-1248019 (Clockwise)

Preceding gene: 113969406

Following gene: 113969410

Centisome position: 26.5

GC content: 48.1

Gene sequence:

>840_bases
ATGTCTACCGAACATCTACTGTTAGTCGGATTACTCAAAAAATTAAAAGATGATGCTTTAGTGCTACCGACTCTGCCCGA
AGTAGCCATGCGGGTACAAGAAGTGGTGAGTCGCTCCGATGCGAGCCTAAAGCAAGTGGCTGAGGTGATCGGTCAAGATG
CGGCGATTTCGGCGCGTATTATTAAAGTCGCCAACAGTGCTTTGTATAGCCGTGGCATTCCCGCCGAGAGCATTAATAGT
GCGGTCTCCCGTATCGGTTTAATCCAAATTAAGAGTATTGCGACCTCAGTAGCTATGGAGCAGCTCTTTATTTCTACCAA
TGAAATGGTATGGGAAGTGATGGATGAAGTGTGGCGCACCTCGATTGAAGTAACGGCCGCCGCCTGCGCCATGTTGCAAA
TGTACAATAAGCGTCACCCCGGTCAGCTCAATCTCGATACCTTAACATTGGCAGGTCTAGTCCATAATATCGGTGCATTA
CCAGTACTGACCGAAGCCGAAGCCCATCCAGAGTTATTCACTAGCATTGATCAATTGCGCTCTTTAGTACGTAAAATGCA
AGGTCCACTGGGACGTGCGGTGTTAAAGAGTTGGGCTTTTGCGCCAGAGGTGATGGAAGTGGTTGAGCGTTGGGCGGATT
TACCTTATCTGCCGGACCATGTGACCTACTTAGATTTTATCCGTGCCGCAGCCTTTTACACCGGTGAGTTACGTGCCGGT
GCCGATTTTGAGCAACGGATGGAAGTCTTTGTGAGTCGTGGTTTACCCGTTTCGGCGAGTGATTTAGCGAGTGATGAATT
TATGGATAAATTCCATTCAATCAGAGAGAGTTACCAGTAG

Upstream 100 bases:

>100_bases
AATAATTAACGTCTGTTGCTTTTTTCTGCCCATCAATCGGTGGGCAACTGATATACTCCAACTATTGAAGATTTATGTTT
GCAGATTGATGGGAGCGAAG

Downstream 100 bases:

>100_bases
TCGTAGGGCCTAGAGGGAAGCCAATCTTACTCCGTGCTGGGGAGAATGGTGTATTAAGCTTACGTGGTAAGATTGAGGCC
AAACTATGGTTATTCTGGGA

Product: putative signal transduction protein

Products: NA

Alternate protein names: Metal Dependent Phosphohydrolase; Histidine Kinase; Metal-Dependent Phosphoesterase; Cytoplasmic Protein; Metal-Dependent Phosphohydrolase; HD Domain-Containing Protein; HD Family Protein; Diguanylate Cyclase; Fusion Protein Comosed Of NSignal Transduction Protein; Metal-Dependent Hydrolase HDOD; Hdod Domain Family Protein

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINS
AVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGAL
PVLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG
ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ

Sequences:

>Translated_279_residues
MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINS
AVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGAL
PVLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG
ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ
>Mature_278_residues
STEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINSA
VSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALP
VLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAGA
DFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ

Specific function: Unknown

COG id: COG1639

COG function: function code T; Predicted signal transduction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30886; Mature: 30755

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARI
CCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
IKVANSALYSRGIPAESINSAVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALPVLTEAEAHPELFTSIDQLR
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH
SLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARI
CCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
IKVANSALYSRGIPAESINSAVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALPVLTEAEAHPELFTSIDQLR
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH
SLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA