| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113968998
Identifier: 113968998
GI number: 113968998
Start: 762385
End: 763500
Strand: Direct
Name: 113968998
Synonym: Shewmr4_0654
Alternate gene names: NA
Gene position: 762385-763500 (Clockwise)
Preceding gene: 113968997
Following gene: 113969000
Centisome position: 16.2
GC content: 51.79
Gene sequence:
>1116_bases ATGCAACCGACTGCGTCGTCTTTAACCATTGGGGAGCTTGCCGCAGGGCAAGCACTCACTCTGCCGATTTACCACTTCAA GCCAAGTGGTCATGTTTCTGGCCCTAAAGTGTATATTCAGGCCAATGTCCACGGCGCTGAGGTGCAGGGGAATGCGGTGA TTTTCCAATTGATGAAGCAGCTTGAGCGCTGTGACATCTTAGGGGAAATCACCTTAGTGCCCTTGGCAAATCCGCTGGGG ATAAATCAAAAGAGTGGTGAGTTTACGCTGGGGCGTTTTGACCCTATCACAGGGGCAAACTGGAACCGCGAGTACTTAAA TCACTCGATTGATTTACCCGCTTGGTACCGTGAACATGCCGAGCTTAGTGATAGTGCGCTTATCCAAGCTTACCGCAGTA CCTTAGTTGAGGCGTGTCAGCAGCGATTACGTAACGAGTGGGGCGTGACCACGGGCCACAGATTAGCGGTTAACCTGCAG GCCATGGCCCACGAGGCGGATATAGTATTGGATCTGCATACCGGGCCTAAATCCTGTAAACACTTGTATTGCCCAGAATA TGATATTGTGGCGGCGCAGTTTTTCTCGATTCCTTACACCTTAGTGATCCCCAATAGTTTTGGCGGGGCTATGGATGAAG CGGCATTTTGCCCTTGGTGGCAATTGAGTGAAGTCGCCAAAGCACAGGGGCGAGAACTTGAGATCGCTGTTTCGGCCTTT ACCTTGGAACTTGCGAGCCAAGAACGCATTTGCCTTGAGGATGCTTTAGTCGATGCTCAGGGGATTTTGGCCTACTTGAG TCATCGTGGGGTGATCGCCGAGCGAGTCGCACCCGCAAAGATGCCACGTTTTGGCTGTTATCTTAAGGATTACAAAAAGT ACCATGCGCCCATGGCGGGATTGGTGGAATATGTGGCGCCCGTGGGAGAGCCACTGGCGGCGGGTGAGACCTTAGTCAAT CTGCTGCGGCTCGACTTATATGGCAGTGAGCAGGAGCTGACGGCGCTAAGCTTGCCGCAGGATTGTGTGCCCATACTCCA TTTTGCCTCGGCGTCAGTGCATCAAGGCACAGAGCTTTATAAAGTCATGACGAATTTGTTTGAATTGCCACAGTAA
Upstream 100 bases:
>100_bases CAAGGCGCCAGCCCGCATAATTTGTGCGTATTGGTCGCCGAATCAGAAGCGGCGCAAGTGGTTAAAGCACTGCACGAAAA CCTGTTCGAAGGCGCGTAAT
Downstream 100 bases:
>100_bases CGGCAATGGGTAAAACAAAACGCCAATCATAAGATTGGCGTTTTTTATTCCAGTCTACAACCACTTAAAGCGATAGAAGA GTGCCATTTGCAGGGCGACC
Product: succinylglutamate desuccinylase/aspartoacylase
Products: NA
Alternate protein names: Deacylase; Succinylglutamate Desuccinylase; Amino Acid ABC Transporter-Like Protein; Arginine Catabolism Protein; Arginine/Ornithine Transport Operon(AotO) Protein; Succinylglutamate Desuccinylase / Aspartoacylase Family
Number of amino acids: Translated: 371; Mature: 371
Protein sequence:
>371_residues MQPTASSLTIGELAAGQALTLPIYHFKPSGHVSGPKVYIQANVHGAEVQGNAVIFQLMKQLERCDILGEITLVPLANPLG INQKSGEFTLGRFDPITGANWNREYLNHSIDLPAWYREHAELSDSALIQAYRSTLVEACQQRLRNEWGVTTGHRLAVNLQ AMAHEADIVLDLHTGPKSCKHLYCPEYDIVAAQFFSIPYTLVIPNSFGGAMDEAAFCPWWQLSEVAKAQGRELEIAVSAF TLELASQERICLEDALVDAQGILAYLSHRGVIAERVAPAKMPRFGCYLKDYKKYHAPMAGLVEYVAPVGEPLAAGETLVN LLRLDLYGSEQELTALSLPQDCVPILHFASASVHQGTELYKVMTNLFELPQ
Sequences:
>Translated_371_residues MQPTASSLTIGELAAGQALTLPIYHFKPSGHVSGPKVYIQANVHGAEVQGNAVIFQLMKQLERCDILGEITLVPLANPLG INQKSGEFTLGRFDPITGANWNREYLNHSIDLPAWYREHAELSDSALIQAYRSTLVEACQQRLRNEWGVTTGHRLAVNLQ AMAHEADIVLDLHTGPKSCKHLYCPEYDIVAAQFFSIPYTLVIPNSFGGAMDEAAFCPWWQLSEVAKAQGRELEIAVSAF TLELASQERICLEDALVDAQGILAYLSHRGVIAERVAPAKMPRFGCYLKDYKKYHAPMAGLVEYVAPVGEPLAAGETLVN LLRLDLYGSEQELTALSLPQDCVPILHFASASVHQGTELYKVMTNLFELPQ >Mature_371_residues MQPTASSLTIGELAAGQALTLPIYHFKPSGHVSGPKVYIQANVHGAEVQGNAVIFQLMKQLERCDILGEITLVPLANPLG INQKSGEFTLGRFDPITGANWNREYLNHSIDLPAWYREHAELSDSALIQAYRSTLVEACQQRLRNEWGVTTGHRLAVNLQ AMAHEADIVLDLHTGPKSCKHLYCPEYDIVAAQFFSIPYTLVIPNSFGGAMDEAAFCPWWQLSEVAKAQGRELEIAVSAF TLELASQERICLEDALVDAQGILAYLSHRGVIAERVAPAKMPRFGCYLKDYKKYHAPMAGLVEYVAPVGEPLAAGETLVN LLRLDLYGSEQELTALSLPQDCVPILHFASASVHQGTELYKVMTNLFELPQ
Specific function: Unknown
COG id: COG3608
COG function: function code R; Predicted deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40873; Mature: 40873
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPTASSLTIGELAAGQALTLPIYHFKPSGHVSGPKVYIQANVHGAEVQGNAVIFQLMKQ CCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCEECCCHHHHHHHHH LERCDILGEITLVPLANPLGINQKSGEFTLGRFDPITGANWNREYLNHSIDLPAWYREHA HHHCCHHCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCHHHHHHH ELSDSALIQAYRSTLVEACQQRLRNEWGVTTGHRLAVNLQAMAHEADIVLDLHTGPKSCK CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEEEEECCCCHHCC HLYCPEYDIVAAQFFSIPYTLVIPNSFGGAMDEAAFCPWWQLSEVAKAQGRELEIAVSAF CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEE TLELASQERICLEDALVDAQGILAYLSHRGVIAERVAPAKMPRFGCYLKDYKKYHAPMAG EEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH LVEYVAPVGEPLAAGETLVNLLRLDLYGSEQELTALSLPQDCVPILHFASASVHQGTELY HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCHHCCHHHH KVMTNLFELPQ HHHHHHHCCCC >Mature Secondary Structure MQPTASSLTIGELAAGQALTLPIYHFKPSGHVSGPKVYIQANVHGAEVQGNAVIFQLMKQ CCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCEECCCHHHHHHHHH LERCDILGEITLVPLANPLGINQKSGEFTLGRFDPITGANWNREYLNHSIDLPAWYREHA HHHCCHHCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCHHHHHHH ELSDSALIQAYRSTLVEACQQRLRNEWGVTTGHRLAVNLQAMAHEADIVLDLHTGPKSCK CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEEEEECCCCHHCC HLYCPEYDIVAAQFFSIPYTLVIPNSFGGAMDEAAFCPWWQLSEVAKAQGRELEIAVSAF CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEE TLELASQERICLEDALVDAQGILAYLSHRGVIAERVAPAKMPRFGCYLKDYKKYHAPMAG EEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH LVEYVAPVGEPLAAGETLVNLLRLDLYGSEQELTALSLPQDCVPILHFASASVHQGTELY HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHCCCHHCCHHHH KVMTNLFELPQ HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA