| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is yusP [H]
Identifier: 113968407
GI number: 113968407
Start: 71544
End: 72992
Strand: Direct
Name: yusP [H]
Synonym: Shewmr4_0062
Alternate gene names: 113968407
Gene position: 71544-72992 (Clockwise)
Preceding gene: 113968406
Following gene: 113968408
Centisome position: 1.52
GC content: 54.52
Gene sequence:
>1449_bases ATGACCCCAGCGTCTGCTTCGTCCCCTCATGAGCCTCTGCCCACCTCGGTTTTTCTGGCGATTTTCTCCGCCGTATTCTT ACCCATGTTTCTGGCGGCGGTCGATCAAACCTTACTCGCTACCGCCACCCCAGCGATAGTGGAAGATCTTGGCGGCCTCA GGCAAGCCTCGTGGATCACTATCGGTTATATGCTGGCGATGGCGGCCAGTGTGCCTATTTACGGCTGGCTAGGGGATAAC TATGGCCGCGCTAAAATTCTGATGATCGCCTTAGTGGTGTTTGCGTTGGGTTCAATTGTTTCCGCCAGTGCTGGGACTAT GGACCATATGATTGCTGGCCGGATCCTCCAAGGCCTCGGTGGTGGCGGGCTGATGAGTCTGTCCCAATCCCTTGTGGGGG AATTGGTGCCTATACGGCAAAGGGCACGTTTTCAGGGCTATTTTGCCGCTATGTTTACCCTCGCCAGTGTTGGCGGCCCT GTGATTGGTGGCTTTGTGGTGCATGCCTATTCTTGGCACTGGTTATTTTGGGCGAATATTCCTTTGGTCATGCTGGCGGT TTGGCGGCTTAATCGCCTGCATAAACAGAGTGTTAAACCGGTGCGGCAAGGGCGGTTTGACTTACTCGGCGTACTGTTAT TTCCCACGATCATCACAGCGCTGCTGTATTGGTTGTCCGTGGCGGGGCAAGACTTTGCTTGGCTATCGGCCACAAGCTTA GGCTTTATGGGATTTATCTGTGTGGGTGCCCTTGTGCTGTTGTGGTGGGAACGTCGGCGTGAGAGTCCTTTCTTACCGCT GGATTTACTCGCCAATAAAGCCATTTATATGCCGCTCTTCACGGCCGCGCTGTTTGCCGCCTGCCTGTTTGCGATGATCT TCTTTTTACCCATTTACTTGCAGGTCGGTCTGCACACCAATCCGGCCAAAACGGGCTTGCTGCTGATGCCAATGACCTTT GGCATTGTGACGGGCTCCACCATCGCTGGCAGGCTGTTGAGTCGGGATGTGGCGCCTAAATGGTTGCCGACCTTCGGCAT GGGCTTGGCCTTTATCGGTTTGCTCTTAATCGGTTTAGTGCCGCCGAATGCGAATCTTATCGGTGCTTTAGGTGTGCTGG TGGGCATTGGTTTAGGGACTGTGATGCCCAGCGTGCAGCTAGTGGTGCAGAGCGTGTCGGGCAAGGCGCGTTTAAGCCAA ATCACCGCTATGGTGTCCTTGAGTCGTTCCATGGGCGCGGCAATTGGTACGGCTTTATTCAGTCTGTTGCTATATGGCTT ATTGCCGCTCGACGGGGCACAGGTGGGAATTGCGGCAATAAAGCAGTTACCCATAGAGGTTGTGCATCACGCTTTCCAAT GGGGTTTTATCGCGGCGGCACTGGTGGCGCTCAGCTCGGCGATTGTGGGTTATTTGTCGCCTGCGACTGCGCTTAGGGAT CATGAGTAG
Upstream 100 bases:
>100_bases GAGCCAAGGGGTGAAAATTTCGAGCCTGCTAAACAGTTATTGGGCATCAAAGTATTGGAATGCAAGGCGAATTTAAGCCT TAATCACAGGTGGAGACTCT
Downstream 100 bases:
>100_bases ATTTGTTGGTGCACGACGGATTTAAGCTGTGTAGTATTTGCGGTAGGTTAGCTTCCGCTGTGACCCCATTCTTTGCCAGG AATTCTGCATGACAACTAAA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MTPASASSPHEPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDN YGRAKILMIALVVFALGSIVSASAGTMDHMIAGRILQGLGGGGLMSLSQSLVGELVPIRQRARFQGYFAAMFTLASVGGP VIGGFVVHAYSWHWLFWANIPLVMLAVWRLNRLHKQSVKPVRQGRFDLLGVLLFPTIITALLYWLSVAGQDFAWLSATSL GFMGFICVGALVLLWWERRRESPFLPLDLLANKAIYMPLFTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLMPMTF GIVTGSTIAGRLLSRDVAPKWLPTFGMGLAFIGLLLIGLVPPNANLIGALGVLVGIGLGTVMPSVQLVVQSVSGKARLSQ ITAMVSLSRSMGAAIGTALFSLLLYGLLPLDGAQVGIAAIKQLPIEVVHHAFQWGFIAAALVALSSAIVGYLSPATALRD HE
Sequences:
>Translated_482_residues MTPASASSPHEPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDN YGRAKILMIALVVFALGSIVSASAGTMDHMIAGRILQGLGGGGLMSLSQSLVGELVPIRQRARFQGYFAAMFTLASVGGP VIGGFVVHAYSWHWLFWANIPLVMLAVWRLNRLHKQSVKPVRQGRFDLLGVLLFPTIITALLYWLSVAGQDFAWLSATSL GFMGFICVGALVLLWWERRRESPFLPLDLLANKAIYMPLFTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLMPMTF GIVTGSTIAGRLLSRDVAPKWLPTFGMGLAFIGLLLIGLVPPNANLIGALGVLVGIGLGTVMPSVQLVVQSVSGKARLSQ ITAMVSLSRSMGAAIGTALFSLLLYGLLPLDGAQVGIAAIKQLPIEVVHHAFQWGFIAAALVALSSAIVGYLSPATALRD HE >Mature_481_residues TPASASSPHEPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDNY GRAKILMIALVVFALGSIVSASAGTMDHMIAGRILQGLGGGGLMSLSQSLVGELVPIRQRARFQGYFAAMFTLASVGGPV IGGFVVHAYSWHWLFWANIPLVMLAVWRLNRLHKQSVKPVRQGRFDLLGVLLFPTIITALLYWLSVAGQDFAWLSATSLG FMGFICVGALVLLWWERRRESPFLPLDLLANKAIYMPLFTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLMPMTFG IVTGSTIAGRLLSRDVAPKWLPTFGMGLAFIGLLLIGLVPPNANLIGALGVLVGIGLGTVMPSVQLVVQSVSGKARLSQI TAMVSLSRSMGAAIGTALFSLLLYGLLPLDGAQVGIAAIKQLPIEVVHHAFQWGFIAAALVALSSAIVGYLSPATALRDH E
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=410, Percent_Identity=29.2682926829268, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1790195, Length=317, Percent_Identity=27.7602523659306, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI1789042, Length=328, Percent_Identity=25.9146341463415, Blast_Score=109, Evalue=4e-25, Organism=Escherichia coli, GI1788392, Length=339, Percent_Identity=29.7935103244838, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1788710, Length=319, Percent_Identity=25.3918495297806, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1788509, Length=168, Percent_Identity=27.3809523809524, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6323735, Length=323, Percent_Identity=25.3869969040248, Blast_Score=107, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6322958, Length=463, Percent_Identity=23.5421166306695, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6325455, Length=426, Percent_Identity=23.7089201877934, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6321663, Length=152, Percent_Identity=32.2368421052632, Blast_Score=90, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6319770, Length=383, Percent_Identity=25.065274151436, Blast_Score=81, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6324415, Length=445, Percent_Identity=23.3707865168539, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 51359; Mature: 51228
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPASASSPHEPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWIT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH IGYMLAMAASVPIYGWLGDNYGRAKILMIALVVFALGSIVSASAGTMDHMIAGRILQGLG HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GGGLMSLSQSLVGELVPIRQRARFQGYFAAMFTLASVGGPVIGGFVVHAYSWHWLFWANI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH PLVMLAVWRLNRLHKQSVKPVRQGRFDLLGVLLFPTIITALLYWLSVAGQDFAWLSATSL HHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GFMGFICVGALVLLWWERRRESPFLPLDLLANKAIYMPLFTAALFAACLFAMIFFLPIYL HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QVGLHTNPAKTGLLLMPMTFGIVTGSTIAGRLLSRDVAPKWLPTFGMGLAFIGLLLIGLV HHCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PPNANLIGALGVLVGIGLGTVMPSVQLVVQSVSGKARLSQITAMVSLSRSMGAAIGTALF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SLLLYGLLPLDGAQVGIAAIKQLPIEVVHHAFQWGFIAAALVALSSAIVGYLSPATALRD HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC HE CC >Mature Secondary Structure TPASASSPHEPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWIT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH IGYMLAMAASVPIYGWLGDNYGRAKILMIALVVFALGSIVSASAGTMDHMIAGRILQGLG HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC GGGLMSLSQSLVGELVPIRQRARFQGYFAAMFTLASVGGPVIGGFVVHAYSWHWLFWANI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH PLVMLAVWRLNRLHKQSVKPVRQGRFDLLGVLLFPTIITALLYWLSVAGQDFAWLSATSL HHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GFMGFICVGALVLLWWERRRESPFLPLDLLANKAIYMPLFTAALFAACLFAMIFFLPIYL HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QVGLHTNPAKTGLLLMPMTFGIVTGSTIAGRLLSRDVAPKWLPTFGMGLAFIGLLLIGLV HHCCCCCCCCCCEEEEHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PPNANLIGALGVLVGIGLGTVMPSVQLVVQSVSGKARLSQITAMVSLSRSMGAAIGTALF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SLLLYGLLPLDGAQVGIAAIKQLPIEVVHHAFQWGFIAAALVALSSAIVGYLSPATALRD HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC HE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]