| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478342
Identifier: 113478342
GI number: 113478342
Start: 7669368
End: 7671188
Strand: Reverse
Name: 113478342
Synonym: Tery_5018
Alternate gene names: NA
Gene position: 7671188-7669368 (Counterclockwise)
Preceding gene: 113478343
Following gene: 113478341
Centisome position: 98.98
GC content: 40.09
Gene sequence:
>1821_bases ATGACTACTCCAGTAGAGTTTACTTTTTCCGACTTGATCGCCGGGTATGTTACAAACTTCGACTCAGGCACAGATATTTT TGGGCTCAAAACAACAGATGGCAGAGAATTTAAAGCCAAGTTAACTCCTACTAGTTATGCTAAGCTAGTACAAAACTTAG ACGAAGCATACCCAGATGCTACAGGTGCTATGCGATCGATGCTGGTGCCTGGTAGGTATGTATTCACTTATGGCGTTTTT TACCCAGATAGTTCCATATTTGAAGCTAAACAAATAGTATTTGTCGGTCGTCAAGCAGATGACTATATATTTGAAAAATC AAACTGGTGGGTACACCAGGTTCGCTCCCTAGCTAATTTTTATGTCAAAGCTCAATTTGCTGGTGAAGAAATAGACTACC GCAACTATCGCACAACTTTAAGTCTTTCTGGTGTAAGGTCTCAGGTGAATTTCCGACAAGAAACAGATACTATCTCCCGG ATGGTTTATGGGATGGCTACAGCATATATGATGACTGGGGAAGAAATTTTCCTAGAAGCAGCTGAGAAAGGTACTGAATA TCTGAGAGACCACATGAGATTTGTGGACTTAGATGAAGGTATAGTTTATTGGTATCACGGTATCGATGTGCAAGGGGAAC GAGAGCAGAAAATTTTCGCTTCAGAATTTGGTGATGACTATGATGCTATTCCCGCTTACGAACAAATTTATGCCTTGGCA GGTCCATTACAAACTTATCGCATTAATGGCGACCCTAGGATAATGGACGATACCGAGAAAACTATTAAGTTATTCAACGA CTTTTTTCTAGATAAAACTGATCGCGGTGGTTATTACTCCCACCTAGATCCTATTACTCTAGATCCTCTGAGCGAGTCAT TAGGTCGGAACAAAGGTACTAAAAACTGGAACTCAGTTGGTGACCATGCACCAGCATATCTAATTAATCTCTGGTTAGCG ACAGAAAAACCTGAATATGCAGATATGCTCGAATACACTTTCGATACTATTGAAAAGCGTTTTCCAGATTACGAAAACTG CCCCTTTGTCAATGAAAAATTCTTTGAAGACTGGAGTGCAGATCATACTTGGGGATGGCAGCAAAACCGGGCAGTAATTG GTCACAATATGAAAATTGCTTGGAATTTGATGCGGATGAATAGCCTCAAACCTAAGGATACTTATGTTGAACTGGCAAAG AAAATTGCTGAGGTGATGCCAGCAGTAGGGAGTGATCAACAACGAGGTGGTTGGTATGACGTGGTGGAAAGAGCATTAGG AGAAGATGAAAAAAATCATCGTTTTGTTTGGCATGATCGCAAAGCTTGGTGGCAGCAAGAACAGTCTATTCTGGCTTATT ATATTCTTGCAGGAACTCTTAAAGATCAAGAATATCATCGTTTAGGGCGGGAAGCTGCAGCTTTTTACAACGCCTGGTTT CTGGATACAGAAGATGGTGGGGTTTATTTCAATGTTCTTGCTAATGGTATCCCTTTCTTGGCAAGTGGTAATGAACGAGG TAAAGGTTCCCACTCTATGAGCGGTTATCACTCTACAGAATTATGCTATCTAGCTGCAGTTTATACTAATCTATTGGTTA CTAAGCAGCCAATGGATTTTTATTTTAAGCCTATTCCTAGTGGTTTCCCTGATAATATTTTACGAGTATCACCAGATATT CTGCCTCCTGGTAGCATTAAAATTGGTTCTGTAGAAATTGATGGTAAACCTTACAGTGATTTTGATGCGGATAAACTTTT TGTGAAGTTGCCTGATACTAAGGAACGGGTGAAAGTTAAGGTCAATATTGTACCTAATTAA
Upstream 100 bases:
>100_bases TAAACCCGGTTTTTTTTGTTTGGGTTGGTTAGTCCTGATAATAACCTTTTAGCTGAGACAAAAAACATTAAAAAAACTTG TAATTAAAGATAATTAAAAA
Downstream 100 bases:
>100_bases TTAGACAAGAAACACTATGGGTGAAACCTAACCCCCCTGGCCGTCGCCTTGAAGGAGATGGCCATGGGGAGAGGTATTAA AGTCCAGTAGAGTGGGTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Anti-Sigma-Factor Antagonist; N-Acylglucosamine 2-Epimerase
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MTTPVEFTFSDLIAGYVTNFDSGTDIFGLKTTDGREFKAKLTPTSYAKLVQNLDEAYPDATGAMRSMLVPGRYVFTYGVF YPDSSIFEAKQIVFVGRQADDYIFEKSNWWVHQVRSLANFYVKAQFAGEEIDYRNYRTTLSLSGVRSQVNFRQETDTISR MVYGMATAYMMTGEEIFLEAAEKGTEYLRDHMRFVDLDEGIVYWYHGIDVQGEREQKIFASEFGDDYDAIPAYEQIYALA GPLQTYRINGDPRIMDDTEKTIKLFNDFFLDKTDRGGYYSHLDPITLDPLSESLGRNKGTKNWNSVGDHAPAYLINLWLA TEKPEYADMLEYTFDTIEKRFPDYENCPFVNEKFFEDWSADHTWGWQQNRAVIGHNMKIAWNLMRMNSLKPKDTYVELAK KIAEVMPAVGSDQQRGGWYDVVERALGEDEKNHRFVWHDRKAWWQQEQSILAYYILAGTLKDQEYHRLGREAAAFYNAWF LDTEDGGVYFNVLANGIPFLASGNERGKGSHSMSGYHSTELCYLAAVYTNLLVTKQPMDFYFKPIPSGFPDNILRVSPDI LPPGSIKIGSVEIDGKPYSDFDADKLFVKLPDTKERVKVKVNIVPN
Sequences:
>Translated_606_residues MTTPVEFTFSDLIAGYVTNFDSGTDIFGLKTTDGREFKAKLTPTSYAKLVQNLDEAYPDATGAMRSMLVPGRYVFTYGVF YPDSSIFEAKQIVFVGRQADDYIFEKSNWWVHQVRSLANFYVKAQFAGEEIDYRNYRTTLSLSGVRSQVNFRQETDTISR MVYGMATAYMMTGEEIFLEAAEKGTEYLRDHMRFVDLDEGIVYWYHGIDVQGEREQKIFASEFGDDYDAIPAYEQIYALA GPLQTYRINGDPRIMDDTEKTIKLFNDFFLDKTDRGGYYSHLDPITLDPLSESLGRNKGTKNWNSVGDHAPAYLINLWLA TEKPEYADMLEYTFDTIEKRFPDYENCPFVNEKFFEDWSADHTWGWQQNRAVIGHNMKIAWNLMRMNSLKPKDTYVELAK KIAEVMPAVGSDQQRGGWYDVVERALGEDEKNHRFVWHDRKAWWQQEQSILAYYILAGTLKDQEYHRLGREAAAFYNAWF LDTEDGGVYFNVLANGIPFLASGNERGKGSHSMSGYHSTELCYLAAVYTNLLVTKQPMDFYFKPIPSGFPDNILRVSPDI LPPGSIKIGSVEIDGKPYSDFDADKLFVKLPDTKERVKVKVNIVPN >Mature_605_residues TTPVEFTFSDLIAGYVTNFDSGTDIFGLKTTDGREFKAKLTPTSYAKLVQNLDEAYPDATGAMRSMLVPGRYVFTYGVFY PDSSIFEAKQIVFVGRQADDYIFEKSNWWVHQVRSLANFYVKAQFAGEEIDYRNYRTTLSLSGVRSQVNFRQETDTISRM VYGMATAYMMTGEEIFLEAAEKGTEYLRDHMRFVDLDEGIVYWYHGIDVQGEREQKIFASEFGDDYDAIPAYEQIYALAG PLQTYRINGDPRIMDDTEKTIKLFNDFFLDKTDRGGYYSHLDPITLDPLSESLGRNKGTKNWNSVGDHAPAYLINLWLAT EKPEYADMLEYTFDTIEKRFPDYENCPFVNEKFFEDWSADHTWGWQQNRAVIGHNMKIAWNLMRMNSLKPKDTYVELAKK IAEVMPAVGSDQQRGGWYDVVERALGEDEKNHRFVWHDRKAWWQQEQSILAYYILAGTLKDQEYHRLGREAAAFYNAWFL DTEDGGVYFNVLANGIPFLASGNERGKGSHSMSGYHSTELCYLAAVYTNLLVTKQPMDFYFKPIPSGFPDNILRVSPDIL PPGSIKIGSVEIDGKPYSDFDADKLFVKLPDTKERVKVKVNIVPN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69638; Mature: 69507
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPVEFTFSDLIAGYVTNFDSGTDIFGLKTTDGREFKAKLTPTSYAKLVQNLDEAYPDA CCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCH TGAMRSMLVPGRYVFTYGVFYPDSSIFEAKQIVFVGRQADDYIFEKSNWWVHQVRSLANF HHHHHHHCCCCEEEEEEEEECCCCCHHCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHH YVKAQFAGEEIDYRNYRTTLSLSGVRSQVNFRQETDTISRMVYGMATAYMMTGEEIFLEA EEEEEECCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHH AEKGTEYLRDHMRFVDLDEGIVYWYHGIDVQGEREQKIFASEFGDDYDAIPAYEQIYALA HHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH GPLQTYRINGDPRIMDDTEKTIKLFNDFFLDKTDRGGYYSHLDPITLDPLSESLGRNKGT CCCEEEEECCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHCCCCCC KNWNSVGDHAPAYLINLWLATEKPEYADMLEYTFDTIEKRFPDYENCPFVNEKFFEDWSA CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCC DHTWGWQQNRAVIGHNMKIAWNLMRMNSLKPKDTYVELAKKIAEVMPAVGSDQQRGGWYD CCCCCCCCCCEEECCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH VVERALGEDEKNHRFVWHDRKAWWQQEQSILAYYILAGTLKDQEYHRLGREAAAFYNAWF HHHHHHCCCCCCCEEEEECHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHEEEE LDTEDGGVYFNVLANGIPFLASGNERGKGSHSMSGYHSTELCYLAAVYTNLLVTKQPMDF EECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCC YFKPIPSGFPDNILRVSPDILPPGSIKIGSVEIDGKPYSDFDADKLFVKLPDTKERVKVK EEECCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEE VNIVPN EEECCC >Mature Secondary Structure TTPVEFTFSDLIAGYVTNFDSGTDIFGLKTTDGREFKAKLTPTSYAKLVQNLDEAYPDA CCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCH TGAMRSMLVPGRYVFTYGVFYPDSSIFEAKQIVFVGRQADDYIFEKSNWWVHQVRSLANF HHHHHHHCCCCEEEEEEEEECCCCCHHCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHH YVKAQFAGEEIDYRNYRTTLSLSGVRSQVNFRQETDTISRMVYGMATAYMMTGEEIFLEA EEEEEECCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHH AEKGTEYLRDHMRFVDLDEGIVYWYHGIDVQGEREQKIFASEFGDDYDAIPAYEQIYALA HHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH GPLQTYRINGDPRIMDDTEKTIKLFNDFFLDKTDRGGYYSHLDPITLDPLSESLGRNKGT CCCEEEEECCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHCCCCCC KNWNSVGDHAPAYLINLWLATEKPEYADMLEYTFDTIEKRFPDYENCPFVNEKFFEDWSA CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCC DHTWGWQQNRAVIGHNMKIAWNLMRMNSLKPKDTYVELAKKIAEVMPAVGSDQQRGGWYD CCCCCCCCCCEEECCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH VVERALGEDEKNHRFVWHDRKAWWQQEQSILAYYILAGTLKDQEYHRLGREAAAFYNAWF HHHHHHCCCCCCCEEEEECHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHEEEE LDTEDGGVYFNVLANGIPFLASGNERGKGSHSMSGYHSTELCYLAAVYTNLLVTKQPMDF EECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCC YFKPIPSGFPDNILRVSPDILPPGSIKIGSVEIDGKPYSDFDADKLFVKLPDTKERVKVK EEECCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEE VNIVPN EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA