| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477972
Identifier: 113477972
GI number: 113477972
Start: 7050474
End: 7051247
Strand: Reverse
Name: 113477972
Synonym: Tery_4584
Alternate gene names: NA
Gene position: 7051247-7050474 (Counterclockwise)
Preceding gene: 113477973
Following gene: 113477970
Centisome position: 90.98
GC content: 39.02
Gene sequence:
>774_bases ATGACTATCATACATCCAAAAGAAATATATGATTTATTGTTAGAATATGGCAACACTACGACTCCTATCAAAAAAATATT AATAGGTTTAACCTGGACTTTATGTGAAACTGAAGGTATTGGTTTATGTATGAGCCCGGGTACAACTACGCGCACATTGC CTTGGTCAGGAACTCTAGTAAATAAACCTGCGAAAGAGTTGGCATCATGGTTGCGGTCTTGGAATAGCTTTGAGGCAACT GTGGGAATGGCAACTATTAATGCAGAGATAAATCGAAGATCTGCTGTGCGAAAGGAAAAGCTACCTCCGACTCAAGCAGA ACCCTTATCTCCTTATGGACCTGGGAATTTGGCAGTATTTGAATATTTTTTACCAATGATCCGTGGAAAAAAAGTTGCTA TTATTGGTAGGTATCCTAAGTTGTCTCGTTATCAGAATGAAATGGAGATGACTGTCATTGAACGGCAACCGGGAGCAGAG GACTTTCCGGACACTGCATCAGAATATTTATTACCGGAGGCCGAATGGGTCTTTTTAACAGCGACTTCTATTGCTAATAA AACTTTTCCGCGGTTGGTAGAGTTGGCAAAAAATTCTCAGTTAGTTTTGATGGGTCCAAGTATGCCTTGGTTATTAGAGT TAAAGGCATTTGGGATTAATTATTTGGCAGGAGTTACTGTTAGTAATGTTGAAGTTTTAAAACAAACTGTTGCTGAAGGT GGAGGGGTAAGAATTTTTGAAACAGGTGTGCAATATCAAGTGTTAAAGTTGTAG
Upstream 100 bases:
>100_bases ATTAAACCCTATTAAATATAGTAATTCTACGTAATTTATGGAGGAGTTCATCCAGTTCCTCTACAGAAGACTAACTAATA ACTTATAACTAATAACTGCA
Downstream 100 bases:
>100_bases TAAGCTTATAGCTCCTCAAGATATTTTCCATGATCATGTAAAAAATGCTTAAATCAAAGAAAATTAGATTATTATTAATG ACAAAAAATAGAGTCTCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTIIHPKEIYDLLLEYGNTTTPIKKILIGLTWTLCETEGIGLCMSPGTTTRTLPWSGTLVNKPAKELASWLRSWNSFEAT VGMATINAEINRRSAVRKEKLPPTQAEPLSPYGPGNLAVFEYFLPMIRGKKVAIIGRYPKLSRYQNEMEMTVIERQPGAE DFPDTASEYLLPEAEWVFLTATSIANKTFPRLVELAKNSQLVLMGPSMPWLLELKAFGINYLAGVTVSNVEVLKQTVAEG GGVRIFETGVQYQVLKL
Sequences:
>Translated_257_residues MTIIHPKEIYDLLLEYGNTTTPIKKILIGLTWTLCETEGIGLCMSPGTTTRTLPWSGTLVNKPAKELASWLRSWNSFEAT VGMATINAEINRRSAVRKEKLPPTQAEPLSPYGPGNLAVFEYFLPMIRGKKVAIIGRYPKLSRYQNEMEMTVIERQPGAE DFPDTASEYLLPEAEWVFLTATSIANKTFPRLVELAKNSQLVLMGPSMPWLLELKAFGINYLAGVTVSNVEVLKQTVAEG GGVRIFETGVQYQVLKL >Mature_256_residues TIIHPKEIYDLLLEYGNTTTPIKKILIGLTWTLCETEGIGLCMSPGTTTRTLPWSGTLVNKPAKELASWLRSWNSFEATV GMATINAEINRRSAVRKEKLPPTQAEPLSPYGPGNLAVFEYFLPMIRGKKVAIIGRYPKLSRYQNEMEMTVIERQPGAED FPDTASEYLLPEAEWVFLTATSIANKTFPRLVELAKNSQLVLMGPSMPWLLELKAFGINYLAGVTVSNVEVLKQTVAEGG GVRIFETGVQYQVLKL
Specific function: Unknown
COG id: COG2014
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28613; Mature: 28481
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIHPKEIYDLLLEYGNTTTPIKKILIGLTWTLCETEGIGLCMSPGTTTRTLPWSGTLV CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCEEEECCCCCEEECCCCCCCC NKPAKELASWLRSWNSFEATVGMATINAEINRRSAVRKEKLPPTQAEPLSPYGPGNLAVF CCCHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH EYFLPMIRGKKVAIIGRYPKLSRYQNEMEMTVIERQPGAEDFPDTASEYLLPEAEWVFLT HHHHHHHCCCEEEEEECCCCHHHHHCHHEEEEEECCCCCCCCCCCHHHHCCCCCCEEEEE ATSIANKTFPRLVELAKNSQLVLMGPSMPWLLELKAFGINYLAGVTVSNVEVLKQTVAEG EHHHHCHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHCCHHHHCCEEHHHHHHHHHHHCC GGVRIFETGVQYQVLKL CCEEEEECCCCEEEEEC >Mature Secondary Structure TIIHPKEIYDLLLEYGNTTTPIKKILIGLTWTLCETEGIGLCMSPGTTTRTLPWSGTLV CCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCEEEECCCCCEEECCCCCCCC NKPAKELASWLRSWNSFEATVGMATINAEINRRSAVRKEKLPPTQAEPLSPYGPGNLAVF CCCHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH EYFLPMIRGKKVAIIGRYPKLSRYQNEMEMTVIERQPGAEDFPDTASEYLLPEAEWVFLT HHHHHHHCCCEEEEEECCCCHHHHHCHHEEEEEECCCCCCCCCCCHHHHCCCCCCEEEEE ATSIANKTFPRLVELAKNSQLVLMGPSMPWLLELKAFGINYLAGVTVSNVEVLKQTVAEG EHHHHCHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHCCHHHHCCEEHHHHHHHHHHHCC GGVRIFETGVQYQVLKL CCEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA