Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477970

Identifier: 113477970

GI number: 113477970

Start: 7047902

End: 7048252

Strand: Reverse

Name: 113477970

Synonym: Tery_4582

Alternate gene names: NA

Gene position: 7048252-7047902 (Counterclockwise)

Preceding gene: 113477972

Following gene: 113477969

Centisome position: 90.94

GC content: 35.04

Gene sequence:

>351_bases
ATGAATAAATCGAAAAAATATCTAATAAATACTATTTGCGCTTTTCTATGCTTATTAGGGTTTAATACAGTTGTCCTAGC
TGTTACTTCCAAAACAAAAATTGTGCCAATTCCAAAATATCAAATAGCTCAAACTCCTGTTGGTTATTGTACAATATCAG
ACCCAACTGACTCACCTCTGAATGTACGAGAAAGACCAAATGGCAAAGTAATTGGCACCCTGGAAAATGGTGGAGTAGTT
GCTCTTGGAGTTACTGATGGTAGTGAGGGTGAAAATTGGACAAGAATTATTCGGCCAATAGAGGGTTATGTATGGGCAAA
ATATTTAAGAGATTGTGAATATAAGTATTAG

Upstream 100 bases:

>100_bases
GTTGCTCGCTCTCTACTGAGGGCTATTTGAGCAGAATAAATAATGGAAATACTGAGGGTATAATTATATTTTATAATCAA
TCTGAACGAGGAAACGAAAT

Downstream 100 bases:

>100_bases
TTAGAATAGTAATAAAATACCAAAATATAATATGAAAAACACAATGGTTTGCACTACTGCCAAGCTGGCAATTATTCGAT
TCAATTAAGGGCTTGTCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MNKSKKYLINTICAFLCLLGFNTVVLAVTSKTKIVPIPKYQIAQTPVGYCTISDPTDSPLNVRERPNGKVIGTLENGGVV
ALGVTDGSEGENWTRIIRPIEGYVWAKYLRDCEYKY

Sequences:

>Translated_116_residues
MNKSKKYLINTICAFLCLLGFNTVVLAVTSKTKIVPIPKYQIAQTPVGYCTISDPTDSPLNVRERPNGKVIGTLENGGVV
ALGVTDGSEGENWTRIIRPIEGYVWAKYLRDCEYKY
>Mature_116_residues
MNKSKKYLINTICAFLCLLGFNTVVLAVTSKTKIVPIPKYQIAQTPVGYCTISDPTDSPLNVRERPNGKVIGTLENGGVV
ALGVTDGSEGENWTRIIRPIEGYVWAKYLRDCEYKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12888; Mature: 12888

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSKKYLINTICAFLCLLGFNTVVLAVTSKTKIVPIPKYQIAQTPVGYCTISDPTDSPL
CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCCCEECCCCCCEEEECCCCCCCC
NVRERPNGKVIGTLENGGVVALGVTDGSEGENWTRIIRPIEGYVWAKYLRDCEYKY
CCCCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKSKKYLINTICAFLCLLGFNTVVLAVTSKTKIVPIPKYQIAQTPVGYCTISDPTDSPL
CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCCCEECCCCCCEEEECCCCCCCC
NVRERPNGKVIGTLENGGVVALGVTDGSEGENWTRIIRPIEGYVWAKYLRDCEYKY
CCCCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA