| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477815
Identifier: 113477815
GI number: 113477815
Start: 6800825
End: 6801370
Strand: Reverse
Name: 113477815
Synonym: Tery_4415
Alternate gene names: NA
Gene position: 6801370-6800825 (Counterclockwise)
Preceding gene: 113477823
Following gene: 113477812
Centisome position: 87.76
GC content: 43.59
Gene sequence:
>546_bases ATGTTGCCAGATATTGAGTGGAAAGATTCCCAGAACTTATTCCTAGAAGAATTCCGGTTTGTAAACCAAGAGGATGCCCT GCCGGGAGCTTTCTTACCCCAAGGGACGAAGTTAATTTTTCAGGGTCAAAGCATTACGCCCCTAATACCCCTCAAGCCTA TACTTCTCCACTATTTTACTCCAGAAGATTTAATTGCCAAGGTCGAGCTAGCTCAAATAAATAGCAGCGACGGACCCCAA GTGCGAGTCATCCTAGACTTGCCCCTTTCGGAGCTCAAAGATGACCCTCGGCAGCCGAAGAATTATCAAATTTATAAAAA TTATCCGATAAAAGAGGAAAATGCTTTGCCTGAAGTGCAGGTATTGGAAATATGGCCGAATTTCCGAGGAGAGGGATGGC ACTCTTATTATGCTTTTTATTACGATGCTGAGTTTGGAGAAGATACTTTCCAAGTGTATCTACCGGAAGCAAAAGAGCGT CACCCTTGTGCATGGTCGGGGTGCTTATCAAATAGATCGCCTAGAAGAATTTCCCAGTTTTATTGA
Upstream 100 bases:
>100_bases GGATTTTTTTGATCTGAAATTTTCATTGTAGACTCCTATATTATGTAATAAGTAAATTTCAGGTAGCTTGTTTACAATTA TAGACACTAAAAAAGAAATT
Downstream 100 bases:
>100_bases GTGCCAGGATAGTTCGGGAAACTGCATTGGTTTAATTTTGCTGAAGACTCCCGAGGAAATTAGGCTCCAATATCGATGGA AAATAGGAGTGGACTTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MLPDIEWKDSQNLFLEEFRFVNQEDALPGAFLPQGTKLIFQGQSITPLIPLKPILLHYFTPEDLIAKVELAQINSSDGPQ VRVILDLPLSELKDDPRQPKNYQIYKNYPIKEENALPEVQVLEIWPNFRGEGWHSYYAFYYDAEFGEDTFQVYLPEAKER HPCAWSGCLSNRSPRRISQFY
Sequences:
>Translated_181_residues MLPDIEWKDSQNLFLEEFRFVNQEDALPGAFLPQGTKLIFQGQSITPLIPLKPILLHYFTPEDLIAKVELAQINSSDGPQ VRVILDLPLSELKDDPRQPKNYQIYKNYPIKEENALPEVQVLEIWPNFRGEGWHSYYAFYYDAEFGEDTFQVYLPEAKER HPCAWSGCLSNRSPRRISQFY >Mature_181_residues MLPDIEWKDSQNLFLEEFRFVNQEDALPGAFLPQGTKLIFQGQSITPLIPLKPILLHYFTPEDLIAKVELAQINSSDGPQ VRVILDLPLSELKDDPRQPKNYQIYKNYPIKEENALPEVQVLEIWPNFRGEGWHSYYAFYYDAEFGEDTFQVYLPEAKER HPCAWSGCLSNRSPRRISQFY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21170; Mature: 21170
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPDIEWKDSQNLFLEEFRFVNQEDALPGAFLPQGTKLIFQGQSITPLIPLKPILLHYFT CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECC PEDLIAKVELAQINSSDGPQVRVILDLPLSELKDDPRQPKNYQIYKNYPIKEENALPEVQ CHHHHEEEEEEECCCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEE VLEIWPNFRGEGWHSYYAFYYDAEFGEDTFQVYLPEAKERHPCAWSGCLSNRSPRRISQF EEEECCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEHHHHCCCCCCHHHCC Y C >Mature Secondary Structure MLPDIEWKDSQNLFLEEFRFVNQEDALPGAFLPQGTKLIFQGQSITPLIPLKPILLHYFT CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECC PEDLIAKVELAQINSSDGPQVRVILDLPLSELKDDPRQPKNYQIYKNYPIKEENALPEVQ CHHHHEEEEEEECCCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEE VLEIWPNFRGEGWHSYYAFYYDAEFGEDTFQVYLPEAKERHPCAWSGCLSNRSPRRISQF EEEECCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEHHHHCCCCCCHHHCC Y C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA