| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476700
Identifier: 113476700
GI number: 113476700
Start: 4826057
End: 4826836
Strand: Reverse
Name: 113476700
Synonym: Tery_3160
Alternate gene names: NA
Gene position: 4826836-4826057 (Counterclockwise)
Preceding gene: 113476701
Following gene: 113476699
Centisome position: 62.28
GC content: 32.69
Gene sequence:
>780_bases ATGTCCTTTGCTATGCAGGGAAAAATGGATTATGAAACTTTAGGGAAAACAGGAGGAATTACCACAACTCCTGGAACACC ACAATGGGCACTTGCAATTAAGTTAAAATTACAATCTGTTCTCAAAAAAAGTATCGTTGCTAATGCAGAACAATTAAAAG CATGGCGTGAATTAATAAAACAACCAGCAGCTTATCAGCAATTACTTGATGAGGAAGGAAAGCCATTTAATAATTATGAA GAATTATGTCATGCTCAACCGCCATATGGATTAGGTTGTGAACCAAAAGAAATTGAGGAATTAATTACTGAACTAGAATC AACTGAAATCAAAAAAGTTGACATTTTAGAAGATCCACTTAAAGATTTAGGAAATCCATCAAATTATTTTCATAAGTTTT CTAAACTTGTGGAAGCTTGTCCAGAAAATCAAGTTTTAAACGCATCTAAAATAGGAGAAATATTAGATTATGCTCATAGT ACTGCTCAACTATGGAGAAAACGATGGGAACATTTGGGATGGTTGGAACAATCAAAAAGTGGCGGAAGAGGTTTTTATCA AATTACTGAATCAGGAAAAACTGCAGTAAAAAATTGGTTGGAACAACAACCAGAAGGTCAATTAAATAAAGAATTATGGA TAGTAGTTGCTAAGAATCCTAAGAAGGCAGCCGAAAAGTTAATTAAGTCATTTACAACTGAAGATTTAAGAGAAGTTTAC AAACTAATTGGAGAATCTTTTAGTAAAAAATCAACTGTATTTCGTGGAGATATGAAATGA
Upstream 100 bases:
>100_bases GGAAAAAATTAATAGCTAAAAATATACCTATTAAAGTATGAGCTAGCAAAAAATAAAATCCTTGGAAACTCAAAAATTAT CTTAGATAACCTAGAATAAA
Downstream 100 bases:
>100_bases ATATTATTCTGTAGTTATCATCGGCTTGACTTAGGTCATAATTCAATGTTTATAGCTTAGATTTAAGCTATTAGCTATAT AATAGCTAATTGTAGATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSFAMQGKMDYETLGKTGGITTTPGTPQWALAIKLKLQSVLKKSIVANAEQLKAWRELIKQPAAYQQLLDEEGKPFNNYE ELCHAQPPYGLGCEPKEIEELITELESTEIKKVDILEDPLKDLGNPSNYFHKFSKLVEACPENQVLNASKIGEILDYAHS TAQLWRKRWEHLGWLEQSKSGGRGFYQITESGKTAVKNWLEQQPEGQLNKELWIVVAKNPKKAAEKLIKSFTTEDLREVY KLIGESFSKKSTVFRGDMK
Sequences:
>Translated_259_residues MSFAMQGKMDYETLGKTGGITTTPGTPQWALAIKLKLQSVLKKSIVANAEQLKAWRELIKQPAAYQQLLDEEGKPFNNYE ELCHAQPPYGLGCEPKEIEELITELESTEIKKVDILEDPLKDLGNPSNYFHKFSKLVEACPENQVLNASKIGEILDYAHS TAQLWRKRWEHLGWLEQSKSGGRGFYQITESGKTAVKNWLEQQPEGQLNKELWIVVAKNPKKAAEKLIKSFTTEDLREVY KLIGESFSKKSTVFRGDMK >Mature_258_residues SFAMQGKMDYETLGKTGGITTTPGTPQWALAIKLKLQSVLKKSIVANAEQLKAWRELIKQPAAYQQLLDEEGKPFNNYEE LCHAQPPYGLGCEPKEIEELITELESTEIKKVDILEDPLKDLGNPSNYFHKFSKLVEACPENQVLNASKIGEILDYAHST AQLWRKRWEHLGWLEQSKSGGRGFYQITESGKTAVKNWLEQQPEGQLNKELWIVVAKNPKKAAEKLIKSFTTEDLREVYK LIGESFSKKSTVFRGDMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29435; Mature: 29304
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFAMQGKMDYETLGKTGGITTTPGTPQWALAIKLKLQSVLKKSIVANAEQLKAWRELIK CCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH QPAAYQQLLDEEGKPFNNYEELCHAQPPYGLGCEPKEIEELITELESTEIKKVDILEDPL CCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH KDLGNPSNYFHKFSKLVEACPENQVLNASKIGEILDYAHSTAQLWRKRWEHLGWLEQSKS HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC GGRGFYQITESGKTAVKNWLEQQPEGQLNKELWIVVAKNPKKAAEKLIKSFTTEDLREVY CCCCEEEEHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCHHHHHHHH KLIGESFSKKSTVFRGDMK HHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SFAMQGKMDYETLGKTGGITTTPGTPQWALAIKLKLQSVLKKSIVANAEQLKAWRELIK CCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH QPAAYQQLLDEEGKPFNNYEELCHAQPPYGLGCEPKEIEELITELESTEIKKVDILEDPL CCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH KDLGNPSNYFHKFSKLVEACPENQVLNASKIGEILDYAHSTAQLWRKRWEHLGWLEQSKS HHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC GGRGFYQITESGKTAVKNWLEQQPEGQLNKELWIVVAKNPKKAAEKLIKSFTTEDLREVY CCCCEEEEHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCHHHHHHHH KLIGESFSKKSTVFRGDMK HHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA