| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476690
Identifier: 113476690
GI number: 113476690
Start: 4804738
End: 4806717
Strand: Reverse
Name: 113476690
Synonym: Tery_3148
Alternate gene names: NA
Gene position: 4806717-4804738 (Counterclockwise)
Preceding gene: 113476691
Following gene: 113476689
Centisome position: 62.02
GC content: 35.76
Gene sequence:
>1980_bases ATGAGCAATCCATTTTCTAATATTTATTCCACTCAAATAGAGCCTAAAAAGGGCGATATTAAACTTCAGAAAAGTCTGCT TAAGCTAGGTTGTGAAGGTGATTTTGATGCTATTAAAACCATGTTTCAACAATTTATTCCTGAAGATGAGGAGATTTATG ATGCGAGATATTTAGGTATTCAAGGTTTTTTTTGTTTGGGAAATCGTCAATTTGCTTGTGTGACTGAGCGTCGGATAGCA CATATTAGTGTAGGTTATTTTGGGGAACTGAATTATGAAGATGGTTATTTAGAGCACATAAATAGTGGTTTTGTTTACAA ACCGAGTAAATTAGCTTTGTATATTCATATAGGAGCTGTAATAGCAGCAATAACTTACACTCTTAGTTCGATTGCAGGGA TAATTTTTGCTCTGGTTTTGGCATTAATCATCCTGCCATTTTCCGGAAAAATATACTATCTAATTTTTAAGTGCGGGCTT GTATTACCCATTAGAGAAGGAAATTTTGTTCTCGCTCCTTATGGAGACAATGTGTATTGGTACACAAATCGCTTGCTTTA CATTTTTACCGATCATAAATTACTAACAAGGGCAAATGCTCTTTACCGTCAATTTATTATCAGCAGAGAAGAACGACTTA ATACAGTTGAAAAATATCCTTTACCAGACTTGGTATCCAGAAGTGAAATCCCTGAATTAACTCCGTTACCCTTATCGTCA TTACCATCAGTTGATGCTCCTGAAAACAGGCCTCTCCAGAAAAGGTTCTCAAGCCTTTATGCTACCGTTCGTAAATTGGT GTTTTTGGAGAGGTCTAATATTAAACCTAAAATAATCACAGGTTTAATAGTTACAATGGGAATAGGAGGATTTTTTGCTG TCACTAATATTCTGATTCCTCAGTTAAAAGAAAAAAAAGCTAAAATTTTACTTGAAGAAGCTAATAGCCTAGAAGAAATA GGGAATTATGAAAGTGCGCTAGAAAAATACCTTGAAGTTTTTGAACTTCTACCTGAATCAGCGGATGCTCCGATACGAGC TTGTTTGATACTCAATCTTGTAAAAAACTCTGAGCCAGAAACAACTATTTCTGTCTGTAAAGCAGCTATTAGTTTTAATC GCTATAATCACTTTCTATGGAAAGAAAAGGGAGATGCTTTATGGAAATTGGATCAAAAAGAAGAAGCATTAGAATCCTAT CAAAAAGTTGTAGAAATTCAATCAGATGATTCAGAAGTTTGGTACAAGATAGGTTTGATTTGGGAAAACAAAGGAGAGAT AAATGAAGCTTTAAATGCTTTTAACAAAGCTATAAAGGGTAATGGAGAATTTGGAGAATTCAGTATAGCGGATGTTTGGC AGAAAAAATGCTATCTTTTAGCTGAACAGGGAGAAGACACTCAAGAAACTTATTATGCCTGCAATCAAAGAGTCGAGCTG GTTGATTATGATTATCGAGCTTGGAAGGAGCGAGGGAATGCTTTGTCGAAGTTAAAGGGTAAACGTCAAGCATTAAATTC CTACTGGAGAGCTGTTCAATTTAAATCAGACGATTCAGAAGTCTGGTATAAAATAGGAGTGATTTACCAGGACAGAGGAT GGCGAGATAAGGCTTTAGATGCTTTTGAGAAGGCGATAGAAGGTAATGGGGAATTTGGAGAATATAGTATAACCCATGTT TGGGACAAAAAATGTTCTATTTACCTTGACTTAGAAAAATTTCCAGACGCTTTTGCAGCTTGCAAAAAAATAAATAAAAA ACTGACAAATGCAACTGTTACAGGCACTTCTTGGGAGACCAAGAATGTTCGCTCTGGAAGCTCTACTGAGACAGAGGTTC TTTTTGAATTAACTATTGGGAGTCCTGTTAGAGTCCTCGACGAGAGGTATAACTCAGATAATTATCTTTGGTACAAAATT TATAGTCCACAGTATCAGAGACAGGGATGGATTGCAAGTCAGTTGATTAAACGCGACTAA
Upstream 100 bases:
>100_bases ATCGCATTAAGTTAAGAGGTGTTGTTTAATAATAGACATCTTTAGTAAAGTAACTTTAAATTATTGTCAATCAAGTAAAA ATAAACTGGTTGGGTAAAAA
Downstream 100 bases:
>100_bases CGATCTAGAGATCGATATTTTTAAAGACCAGTAAAGAGTAAAATCAAATCAATTACCGCAAAATAACCAACTATGTTTGA CCTAGAACTAACCTGGGATA
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide Repeat Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; O-Linked GlcNAc Transferase; TPR Domain-Containing Protein; Serine/Threonine Protein Kinase With TPR Repeats; Peptidase S1 And S6 Chymotrypsin/Hap; Serine/Threonine Kinase; Protein Prenyltransferase Subunit Alpha; Tetratricopeptide Domain-Containing Protein; Serine/Threonine Protein Kinase; TPR Repeat-Containing Serine/Threonin Protein Kinase; Protein Kinase
Number of amino acids: Translated: 659; Mature: 658
Protein sequence:
>659_residues MSNPFSNIYSTQIEPKKGDIKLQKSLLKLGCEGDFDAIKTMFQQFIPEDEEIYDARYLGIQGFFCLGNRQFACVTERRIA HISVGYFGELNYEDGYLEHINSGFVYKPSKLALYIHIGAVIAAITYTLSSIAGIIFALVLALIILPFSGKIYYLIFKCGL VLPIREGNFVLAPYGDNVYWYTNRLLYIFTDHKLLTRANALYRQFIISREERLNTVEKYPLPDLVSRSEIPELTPLPLSS LPSVDAPENRPLQKRFSSLYATVRKLVFLERSNIKPKIITGLIVTMGIGGFFAVTNILIPQLKEKKAKILLEEANSLEEI GNYESALEKYLEVFELLPESADAPIRACLILNLVKNSEPETTISVCKAAISFNRYNHFLWKEKGDALWKLDQKEEALESY QKVVEIQSDDSEVWYKIGLIWENKGEINEALNAFNKAIKGNGEFGEFSIADVWQKKCYLLAEQGEDTQETYYACNQRVEL VDYDYRAWKERGNALSKLKGKRQALNSYWRAVQFKSDDSEVWYKIGVIYQDRGWRDKALDAFEKAIEGNGEFGEYSITHV WDKKCSIYLDLEKFPDAFAACKKINKKLTNATVTGTSWETKNVRSGSSTETEVLFELTIGSPVRVLDERYNSDNYLWYKI YSPQYQRQGWIASQLIKRD
Sequences:
>Translated_659_residues MSNPFSNIYSTQIEPKKGDIKLQKSLLKLGCEGDFDAIKTMFQQFIPEDEEIYDARYLGIQGFFCLGNRQFACVTERRIA HISVGYFGELNYEDGYLEHINSGFVYKPSKLALYIHIGAVIAAITYTLSSIAGIIFALVLALIILPFSGKIYYLIFKCGL VLPIREGNFVLAPYGDNVYWYTNRLLYIFTDHKLLTRANALYRQFIISREERLNTVEKYPLPDLVSRSEIPELTPLPLSS LPSVDAPENRPLQKRFSSLYATVRKLVFLERSNIKPKIITGLIVTMGIGGFFAVTNILIPQLKEKKAKILLEEANSLEEI GNYESALEKYLEVFELLPESADAPIRACLILNLVKNSEPETTISVCKAAISFNRYNHFLWKEKGDALWKLDQKEEALESY QKVVEIQSDDSEVWYKIGLIWENKGEINEALNAFNKAIKGNGEFGEFSIADVWQKKCYLLAEQGEDTQETYYACNQRVEL VDYDYRAWKERGNALSKLKGKRQALNSYWRAVQFKSDDSEVWYKIGVIYQDRGWRDKALDAFEKAIEGNGEFGEYSITHV WDKKCSIYLDLEKFPDAFAACKKINKKLTNATVTGTSWETKNVRSGSSTETEVLFELTIGSPVRVLDERYNSDNYLWYKI YSPQYQRQGWIASQLIKRD >Mature_658_residues SNPFSNIYSTQIEPKKGDIKLQKSLLKLGCEGDFDAIKTMFQQFIPEDEEIYDARYLGIQGFFCLGNRQFACVTERRIAH ISVGYFGELNYEDGYLEHINSGFVYKPSKLALYIHIGAVIAAITYTLSSIAGIIFALVLALIILPFSGKIYYLIFKCGLV LPIREGNFVLAPYGDNVYWYTNRLLYIFTDHKLLTRANALYRQFIISREERLNTVEKYPLPDLVSRSEIPELTPLPLSSL PSVDAPENRPLQKRFSSLYATVRKLVFLERSNIKPKIITGLIVTMGIGGFFAVTNILIPQLKEKKAKILLEEANSLEEIG NYESALEKYLEVFELLPESADAPIRACLILNLVKNSEPETTISVCKAAISFNRYNHFLWKEKGDALWKLDQKEEALESYQ KVVEIQSDDSEVWYKIGLIWENKGEINEALNAFNKAIKGNGEFGEFSIADVWQKKCYLLAEQGEDTQETYYACNQRVELV DYDYRAWKERGNALSKLKGKRQALNSYWRAVQFKSDDSEVWYKIGVIYQDRGWRDKALDAFEKAIEGNGEFGEYSITHVW DKKCSIYLDLEKFPDAFAACKKINKKLTNATVTGTSWETKNVRSGSSTETEVLFELTIGSPVRVLDERYNSDNYLWYKIY SPQYQRQGWIASQLIKRD
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI24656717, Length=202, Percent_Identity=26.7326732673267, Blast_Score=66, Evalue=8e-11, Organism=Drosophila melanogaster, GI18110006, Length=202, Percent_Identity=26.7326732673267, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75661; Mature: 75530
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNPFSNIYSTQIEPKKGDIKLQKSLLKLGCEGDFDAIKTMFQQFIPEDEEIYDARYLGI CCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHEEECC QGFFCLGNRQFACVTERRIAHISVGYFGELNYEDGYLEHINSGFVYKPSKLALYIHIGAV EEEEEECCCEEEEEECCCEEEEEEEEEEEECCCCCHHHHCCCCCEECCCCEEEEEEHHHH IAAITYTLSSIAGIIFALVLALIILPFSGKIYYLIFKCGLVLPIREGNFVLAPYGDNVYW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCEEE YTNRLLYIFTDHKLLTRANALYRQFIISREERLNTVEKYPLPDLVSRSEIPELTPLPLSS EECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC LPSVDAPENRPLQKRFSSLYATVRKLVFLERSNIKPKIITGLIVTMGIGGFFAVTNILIP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH QLKEKKAKILLEEANSLEEIGNYESALEKYLEVFELLPESADAPIRACLILNLVKNSEPE HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH TTISVCKAAISFNRYNHFLWKEKGDALWKLDQKEEALESYQKVVEIQSDDSEVWYKIGLI HHHHHHHHHHHHHHHHHEEEECCCCCEEECCCHHHHHHHHHHHHEECCCCCEEEEEEEEE WENKGEINEALNAFNKAIKGNGEFGEFSIADVWQKKCYLLAEQGEDTQETYYACNQRVEL ECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHCCCEEE VDYDYRAWKERGNALSKLKGKRQALNSYWRAVQFKSDDSEVWYKIGVIYQDRGWRDKALD EECHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCCCCHHHHH AFEKAIEGNGEFGEYSITHVWDKKCSIYLDLEKFPDAFAACKKINKKLTNATVTGTSWET HHHHHHCCCCCCCCEEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHCCCEEECCCCCC KNVRSGSSTETEVLFELTIGSPVRVLDERYNSDNYLWYKIYSPQYQRQGWIASQLIKRD CCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHCC >Mature Secondary Structure SNPFSNIYSTQIEPKKGDIKLQKSLLKLGCEGDFDAIKTMFQQFIPEDEEIYDARYLGI CCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHEEECC QGFFCLGNRQFACVTERRIAHISVGYFGELNYEDGYLEHINSGFVYKPSKLALYIHIGAV EEEEEECCCEEEEEECCCEEEEEEEEEEEECCCCCHHHHCCCCCEECCCCEEEEEEHHHH IAAITYTLSSIAGIIFALVLALIILPFSGKIYYLIFKCGLVLPIREGNFVLAPYGDNVYW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEECCCCEEE YTNRLLYIFTDHKLLTRANALYRQFIISREERLNTVEKYPLPDLVSRSEIPELTPLPLSS EECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC LPSVDAPENRPLQKRFSSLYATVRKLVFLERSNIKPKIITGLIVTMGIGGFFAVTNILIP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH QLKEKKAKILLEEANSLEEIGNYESALEKYLEVFELLPESADAPIRACLILNLVKNSEPE HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH TTISVCKAAISFNRYNHFLWKEKGDALWKLDQKEEALESYQKVVEIQSDDSEVWYKIGLI HHHHHHHHHHHHHHHHHEEEECCCCCEEECCCHHHHHHHHHHHHEECCCCCEEEEEEEEE WENKGEINEALNAFNKAIKGNGEFGEFSIADVWQKKCYLLAEQGEDTQETYYACNQRVEL ECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHCCCEEE VDYDYRAWKERGNALSKLKGKRQALNSYWRAVQFKSDDSEVWYKIGVIYQDRGWRDKALD EECHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEECCCCCHHHHH AFEKAIEGNGEFGEYSITHVWDKKCSIYLDLEKFPDAFAACKKINKKLTNATVTGTSWET HHHHHHCCCCCCCCEEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHCCCEEECCCCCC KNVRSGSSTETEVLFELTIGSPVRVLDERYNSDNYLWYKIYSPQYQRQGWIASQLIKRD CCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA