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The map label for this gene is psbC [H]

Identifier: 113476104

GI number: 113476104

Start: 3827539

End: 3828570

Strand: Direct

Name: psbC [H]

Synonym: Tery_2484

Alternate gene names: 113476104

Gene position: 3827539-3828570 (Clockwise)

Preceding gene: 113476103

Following gene: 113476105

Centisome position: 49.39

GC content: 41.57

Gene sequence:

>1032_bases
ATGACTGTCGCCACTGATGATAACGTGCAAATTCCTTGGCGAGCAGGTAATGCTCGGCTTGTTAACCTATCAGGAAAACT
ATTGGGCGCTCATGTAGCCCATGCTGGGTTAATTGTACTTTGGGCTGGTTCTATTACCTTATCTGAAGTCGGGAACTTTG
ATCCGTCTTTACCAATGTACGAACAAGGATTAATTGTAATACCAAATCTAGCTCGTTTAGGACTTGGAGTTAGTGAAGGG
GGTGCGGTTGTAGATACCTATCCCTATTTTGTAATTGGGGTATTGCATTTAATTAGTTCGGCGTTTTTAGGAGCTGGTGG
TATTTTCCACGCTCTCAAAGGCCCAGAAAAACTAGAAGAAAAATTTTCCTTTTTTGGTTATAGGTGGGATGATCCAGGCA
AAATGACAACTATCCTGGGTATCCATCTCGTATTGTTGGGATTTGGTGCTTTGTTGCTTGTAGCAAAAGCAATGGCATAT
GGTGGATTATACGATCCAGTCATTCAGAATGTGCGGGTAATTTACGATCCAACTTTGAACCCCACAACCATTTTCGGCTA
CTTATTTGGTACACAAGGGCGTTTCTGGCTAGCTGGTGTCAACTCTTTAGAAGATGTAGTAGGTGGTCATATATGGATTG
GTGCTATATGCATTGTGGGTGGTATCTGGCATATGAGAACCGTACCATTTAATTGGGCAAAAGGGTTATTTGTATGGTCA
GGAGAAGCCTATCTATCTTATAGCATTGGAGCAGTAAGTTTAATGGCATTTATAGCCACACTATTTGTATCTGTTAACTC
CCTAGTATTTCCTACAGAATTTTACGGACCCACCTTAACTCTAGTCTTTGATCGCTTTCCTGTATTTGTTAGTTCTGATG
GAGCCTTAACTGCAAGGGTATGGTTAGCTAATGCCCACTTCTGGTTAGGCTTTTTCTTCCTACAAGGACACATATTCCAT
GCCTTACGAGCAGCAGGATATAGCTTTATCGAAGGCAGAGTCATTAATTCTACAAGAGGTCAAGTAAGTTAG

Upstream 100 bases:

>100_bases
TTCCCTCGTTAGTATAATCTAGTTTCAGCTATTCCATAAATACTAACCTTTGTAGTTAAACCAATAAATTCGATGATCTT
AAACAAGGAGAAAAATCGCG

Downstream 100 bases:

>100_bases
TTATGAGTGTAACTCAATCAACAAATCCATTAAGGTTTTTAGGATTTTCCACAGACAATAATGTTGATGTTACGAACTAT
GTTGGTAATTCCCAAGAACC

Product: photosystem antenna protein-like protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTVATDDNVQIPWRAGNARLVNLSGKLLGAHVAHAGLIVLWAGSITLSEVGNFDPSLPMYEQGLIVIPNLARLGLGVSEG
GAVVDTYPYFVIGVLHLISSAFLGAGGIFHALKGPEKLEEKFSFFGYRWDDPGKMTTILGIHLVLLGFGALLLVAKAMAY
GGLYDPVIQNVRVIYDPTLNPTTIFGYLFGTQGRFWLAGVNSLEDVVGGHIWIGAICIVGGIWHMRTVPFNWAKGLFVWS
GEAYLSYSIGAVSLMAFIATLFVSVNSLVFPTEFYGPTLTLVFDRFPVFVSSDGALTARVWLANAHFWLGFFFLQGHIFH
ALRAAGYSFIEGRVINSTRGQVS

Sequences:

>Translated_343_residues
MTVATDDNVQIPWRAGNARLVNLSGKLLGAHVAHAGLIVLWAGSITLSEVGNFDPSLPMYEQGLIVIPNLARLGLGVSEG
GAVVDTYPYFVIGVLHLISSAFLGAGGIFHALKGPEKLEEKFSFFGYRWDDPGKMTTILGIHLVLLGFGALLLVAKAMAY
GGLYDPVIQNVRVIYDPTLNPTTIFGYLFGTQGRFWLAGVNSLEDVVGGHIWIGAICIVGGIWHMRTVPFNWAKGLFVWS
GEAYLSYSIGAVSLMAFIATLFVSVNSLVFPTEFYGPTLTLVFDRFPVFVSSDGALTARVWLANAHFWLGFFFLQGHIFH
ALRAAGYSFIEGRVINSTRGQVS
>Mature_342_residues
TVATDDNVQIPWRAGNARLVNLSGKLLGAHVAHAGLIVLWAGSITLSEVGNFDPSLPMYEQGLIVIPNLARLGLGVSEGG
AVVDTYPYFVIGVLHLISSAFLGAGGIFHALKGPEKLEEKFSFFGYRWDDPGKMTTILGIHLVLLGFGALLLVAKAMAYG
GLYDPVIQNVRVIYDPTLNPTTIFGYLFGTQGRFWLAGVNSLEDVVGGHIWIGAICIVGGIWHMRTVPFNWAKGLFVWSG
EAYLSYSIGAVSLMAFIATLFVSVNSLVFPTEFYGPTLTLVFDRFPVFVSSDGALTARVWLANAHFWLGFFFLQGHIFHA
LRAAGYSFIEGRVINSTRGQVS

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 37256; Mature: 37125

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVATDDNVQIPWRAGNARLVNLSGKLLGAHVAHAGLIVLWAGSITLSEVGNFDPSLPMY
CEEECCCCEEEEEECCCEEEEEECCCHHHHHHHHCCEEEEEECCEEEHHCCCCCCCCCCH
EQGLIVIPNLARLGLGVSEGGAVVDTYPYFVIGVLHLISSAFLGAGGIFHALKGPEKLEE
HCCEEECCCHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH
KFSFFGYRWDDPGKMTTILGIHLVLLGFGALLLVAKAMAYGGLYDPVIQNVRVIYDPTLN
HHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCC
PTTIFGYLFGTQGRFWLAGVNSLEDVVGGHIWIGAICIVGGIWHMRTVPFNWAKGLFVWS
CCEEEEEEECCCCCEEEECCCHHHHHHCCHHHHHHHHHHCCHHHHEECCCCCCCCEEEEC
GEAYLSYSIGAVSLMAFIATLFVSVNSLVFPTEFYGPTLTLVFDRFPVFVSSDGALTARV
CCEEEEECHHHHHHHHHHHHHHHHHCCEECCHHHCCCEEEEEEECCCEEEECCCCEEEEE
WLANAHFWLGFFFLQGHIFHALRAAGYSFIEGRVINSTRGQVS
EEECCHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCC
>Mature Secondary Structure 
TVATDDNVQIPWRAGNARLVNLSGKLLGAHVAHAGLIVLWAGSITLSEVGNFDPSLPMY
EEECCCCEEEEEECCCEEEEEECCCHHHHHHHHCCEEEEEECCEEEHHCCCCCCCCCCH
EQGLIVIPNLARLGLGVSEGGAVVDTYPYFVIGVLHLISSAFLGAGGIFHALKGPEKLEE
HCCEEECCCHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH
KFSFFGYRWDDPGKMTTILGIHLVLLGFGALLLVAKAMAYGGLYDPVIQNVRVIYDPTLN
HHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCC
PTTIFGYLFGTQGRFWLAGVNSLEDVVGGHIWIGAICIVGGIWHMRTVPFNWAKGLFVWS
CCEEEEEEECCCCCEEEECCCHHHHHHCCHHHHHHHHHHCCHHHHEECCCCCCCCEEEEC
GEAYLSYSIGAVSLMAFIATLFVSVNSLVFPTEFYGPTLTLVFDRFPVFVSSDGALTARV
CCEEEEECHHHHHHHHHHHHHHHHHCCEECCHHHCCCEEEEEEECCCEEEECCCCEEEEE
WLANAHFWLGFFFLQGHIFHALRAAGYSFIEGRVINSTRGQVS
EEECCHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]