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The map label for this gene is psbC [H]

Identifier: 113476103

GI number: 113476103

Start: 3826052

End: 3827158

Strand: Direct

Name: psbC [H]

Synonym: Tery_2483

Alternate gene names: 113476103

Gene position: 3826052-3827158 (Clockwise)

Preceding gene: 113476100

Following gene: 113476104

Centisome position: 49.37

GC content: 43.27

Gene sequence:

>1107_bases
ATGCAAACATTAGACAATGAAAACAGAAACACAGTTGAAAAGCCTGAATCTACTAACAGCAGAGGAATCTTCTGGATACC
ATTATGGCGATCGCTAGGCTGGTCTTTTGAAGCAACAGAAGATGAAGGCGCTCCACTGCTAAGAGGGAATATCAGGTTCA
AAGACCTATCCGGGCAATTATTGGGAGCCCACGTAGCACATGCTGGCTTGATAGTGCTATGGGCAGGTGCAATGACCTTG
TTTGAACTATCCCACCTTGATCCTAGCTTACCAATGTATGAGCAGAATCTAATTTTACTGCCCCATCTAGCAACATTAGG
TATTGGTATAAAAGCAGGTGGGGAAGTAATTGACACCTATCCTTACTATGTTATCGGCATGCTGCATCTCATCAGCTCTG
CTGTTTTGGGTGCAGGAGGTATTTATCATGCCGTTTTAGGTCCAAAAAAGCTTGATCCAAAAGGCTTTGGCTACAACTGG
GAAGATGGCAATAAGATGACAACAATTCTAGGTATCCATCTAGTGTTGTTAGGACTTGGAGCAGCACTATTAGTGATAAA
AGCAACAGCTTTAGGCGGTATTTATGATCCACTAGTAGAAAAGGTACGACTAGTACAGCCAAACCTAAATCCTGTCAGAA
TTTTCGGCTATCTATTTGGCTATAGCCCTAATGGCTGGACGATCACTGGTATGGCTAGCGTCGATAATCTCGAAGACGTT
ATCGGTGGTCATGTCTGGGTAAGCCTACTTTGTATTGTTGGCGGTCTATTTCACATTGTCTCCAAGCCTACAAGTTGGGC
AAAAAAGATACTAATATGGTCGGGAGAAGCTTACTTATCTTATAGTTTGGGAGCACTAGCGATCGCAGGCTTCAGTGTAG
CTGTATTCGTCTCCACAAACGAAATTGTTTATCCTAGCATATTTTATGGCCCTATTGGGGGTAACTATGCCCGGGTTAGT
CTAGCCGGTGTTCATGCTACATTAGGTTTTCTAGCTTTACTAGGACATTTATGGCACGCCAACCGAGCTCGTGCTGCTAA
ACGTGGCGTATCTTATGGAACCTTCTTTAACTATATAGCTCTAAGGGCTCAAGTATCTACAACTTAA

Upstream 100 bases:

>100_bases
ATTAAAGCTTAATGCTCTTATTAAGATTCTTTATTAATTGTAGAGGACTACTATTGATACTTTTTAAGTCAATATCCTTC
AGATTGAGGATATAATTTAT

Downstream 100 bases:

>100_bases
TAGCTGAAAGTGCAGAAAGTGCAATAAGCGAAAAGGTTATAAAAAATGTGTAAGTATGCCAAAGCACACTTCTATATAGC
TAATACCATTTTACTGAAGT

Product: photosystem antenna protein-like protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MQTLDNENRNTVEKPESTNSRGIFWIPLWRSLGWSFEATEDEGAPLLRGNIRFKDLSGQLLGAHVAHAGLIVLWAGAMTL
FELSHLDPSLPMYEQNLILLPHLATLGIGIKAGGEVIDTYPYYVIGMLHLISSAVLGAGGIYHAVLGPKKLDPKGFGYNW
EDGNKMTTILGIHLVLLGLGAALLVIKATALGGIYDPLVEKVRLVQPNLNPVRIFGYLFGYSPNGWTITGMASVDNLEDV
IGGHVWVSLLCIVGGLFHIVSKPTSWAKKILIWSGEAYLSYSLGALAIAGFSVAVFVSTNEIVYPSIFYGPIGGNYARVS
LAGVHATLGFLALLGHLWHANRARAAKRGVSYGTFFNYIALRAQVSTT

Sequences:

>Translated_368_residues
MQTLDNENRNTVEKPESTNSRGIFWIPLWRSLGWSFEATEDEGAPLLRGNIRFKDLSGQLLGAHVAHAGLIVLWAGAMTL
FELSHLDPSLPMYEQNLILLPHLATLGIGIKAGGEVIDTYPYYVIGMLHLISSAVLGAGGIYHAVLGPKKLDPKGFGYNW
EDGNKMTTILGIHLVLLGLGAALLVIKATALGGIYDPLVEKVRLVQPNLNPVRIFGYLFGYSPNGWTITGMASVDNLEDV
IGGHVWVSLLCIVGGLFHIVSKPTSWAKKILIWSGEAYLSYSLGALAIAGFSVAVFVSTNEIVYPSIFYGPIGGNYARVS
LAGVHATLGFLALLGHLWHANRARAAKRGVSYGTFFNYIALRAQVSTT
>Mature_368_residues
MQTLDNENRNTVEKPESTNSRGIFWIPLWRSLGWSFEATEDEGAPLLRGNIRFKDLSGQLLGAHVAHAGLIVLWAGAMTL
FELSHLDPSLPMYEQNLILLPHLATLGIGIKAGGEVIDTYPYYVIGMLHLISSAVLGAGGIYHAVLGPKKLDPKGFGYNW
EDGNKMTTILGIHLVLLGLGAALLVIKATALGGIYDPLVEKVRLVQPNLNPVRIFGYLFGYSPNGWTITGMASVDNLEDV
IGGHVWVSLLCIVGGLFHIVSKPTSWAKKILIWSGEAYLSYSLGALAIAGFSVAVFVSTNEIVYPSIFYGPIGGNYARVS
LAGVHATLGFLALLGHLWHANRARAAKRGVSYGTFFNYIALRAQVSTT

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 39789; Mature: 39789

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLDNENRNTVEKPESTNSRGIFWIPLWRSLGWSFEATEDEGAPLLRGNIRFKDLSGQL
CCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCEECCCCCCCCEEECCEEEEECCCCH
LGAHVAHAGLIVLWAGAMTLFELSHLDPSLPMYEQNLILLPHLATLGIGIKAGGEVIDTY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHCCEECCCCCEEECC
PYYVIGMLHLISSAVLGAGGIYHAVLGPKKLDPKGFGYNWEDGNKMTTILGIHLVLLGLG
HHHHHHHHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
AALLVIKATALGGIYDPLVEKVRLVQPNLNPVRIFGYLFGYSPNGWTITGMASVDNLEDV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCHHHHH
IGGHVWVSLLCIVGGLFHIVSKPTSWAKKILIWSGEAYLSYSLGALAIAGFSVAVFVSTN
HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEECHHHHHHCCEEEEEEEECC
EIVYPSIFYGPIGGNYARVSLAGVHATLGFLALLGHLWHANRARAAKRGVSYGTFFNYIA
CEEECEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHE
LRAQVSTT
EEEEECCC
>Mature Secondary Structure
MQTLDNENRNTVEKPESTNSRGIFWIPLWRSLGWSFEATEDEGAPLLRGNIRFKDLSGQL
CCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCEECCCCCCCCEEECCEEEEECCCCH
LGAHVAHAGLIVLWAGAMTLFELSHLDPSLPMYEQNLILLPHLATLGIGIKAGGEVIDTY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHCCEECCCCCEEECC
PYYVIGMLHLISSAVLGAGGIYHAVLGPKKLDPKGFGYNWEDGNKMTTILGIHLVLLGLG
HHHHHHHHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
AALLVIKATALGGIYDPLVEKVRLVQPNLNPVRIFGYLFGYSPNGWTITGMASVDNLEDV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEECCCCHHHHH
IGGHVWVSLLCIVGGLFHIVSKPTSWAKKILIWSGEAYLSYSLGALAIAGFSVAVFVSTN
HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEECHHHHHHCCEEEEEEEECC
EIVYPSIFYGPIGGNYARVSLAGVHATLGFLALLGHLWHANRARAAKRGVSYGTFFNYIA
CEEECEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHE
LRAQVSTT
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]