| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475523
Identifier: 113475523
GI number: 113475523
Start: 2838325
End: 2839446
Strand: Direct
Name: 113475523
Synonym: Tery_1855
Alternate gene names: NA
Gene position: 2838325-2839446 (Clockwise)
Preceding gene: 113475518
Following gene: 113475525
Centisome position: 36.62
GC content: 33.33
Gene sequence:
>1122_bases ATGGAACTTTGGAATATTCCTGCTATTGACCAACACGCTCATAATTTGTTACAACCAAAAGCGATCGCTCATTATCCTTA TGCTGCTGCTTTTACCGAAGCCCATCATACCGATATTATTAATTACCATAGCTGTAATACCCTATTTTATCGTCGAAGTT TACGGGATATGGCAGACTTATTAAAATGTGAACCGCAAGAATCAGAAATATTAGCAAAACGAGATAATTTAGGGTTAGAA AATCTAACCAAAACTTGTTTTAACGCAGCCAACCTAGAGACTATTTTATTAGATGATGGTTTTCTCCCAGAAGAAATTTT ACCTTGGCAATGGCATCAACAATTTGTAGGTGTAAAAAGATTATTAAGAATCGAAAATCTCGCCCAAAATCTAATTCCTC AAGTAAATAGTTTTGGCGAATTTTTGGAAAGATTTAGAGTAGAAATTGACCCCCCGTCCCAAGAAGTAGTGGGTTTTAAA AGTATTGCAGCCTATCGCACAGGTTTAGAGATTCAACCAGTCAATATAGAATTAGCAAAATCTCAATTTAATACTATTAA AAAAAATTCAGGAGAAAAATTACCACGTCTCAATCATAAATCTTTAATTGACTTTTTAATAATCCAGACATTGGAAATAG CTGCAAAATATAAAATGCCAATACAATTTCACACAGGATTTGGCGATCCAGACTTAGATTTACGTCAATCAAATCCTCTA CATTTGCGATTTTTATTAGAAGATAATCGCTTTCAAAATACTCCCATTATTTTATTACATGCTTCCTATCCTTATAGCCG TGAAGCAGGTTATTTAGCATCAGTTTATCCTAATGTTTATATTAGTTTTGGGTTAGCTATACCTTCCTTAAGTATTGCTG GAATGAAACATGTAGTCAGACAATTAATGGATGTAGCACCTATTAGTAAATTGATGTATTCTTCAGATGCTCATTTGATT CCTGACCTGTATTATTTAGGTGCTAAATGGGGGCGAAAAATTTTGGCATACGTGTTAGAGGAATCAGTCAAAGATGGAGA TTTAACTATTAATGAAGCTGAGGAAATAGCTGTAGATGTTCTTAGAAAAAATGCTACTGATATTTATCAATTAGATATGT AA
Upstream 100 bases:
>100_bases TAATTCAATAGCTAAATATTTACCTACTTTTTTGGTTTCCTGGTATCTATTATTATTAGTTATAATCCCAAAATATTGTT CATTAAAAATATAAATAAAA
Downstream 100 bases:
>100_bases TAATATGATGCATCATTTATTCTAATTATTCTTATTTTTGTCACGACAATGTTAGCGAGAGTCTCTTGCTCCCTTATTGA ATTGATAATGGATAGTTACC
Product: amidohydrolase 2
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MELWNIPAIDQHAHNLLQPKAIAHYPYAAAFTEAHHTDIINYHSCNTLFYRRSLRDMADLLKCEPQESEILAKRDNLGLE NLTKTCFNAANLETILLDDGFLPEEILPWQWHQQFVGVKRLLRIENLAQNLIPQVNSFGEFLERFRVEIDPPSQEVVGFK SIAAYRTGLEIQPVNIELAKSQFNTIKKNSGEKLPRLNHKSLIDFLIIQTLEIAAKYKMPIQFHTGFGDPDLDLRQSNPL HLRFLLEDNRFQNTPIILLHASYPYSREAGYLASVYPNVYISFGLAIPSLSIAGMKHVVRQLMDVAPISKLMYSSDAHLI PDLYYLGAKWGRKILAYVLEESVKDGDLTINEAEEIAVDVLRKNATDIYQLDM
Sequences:
>Translated_373_residues MELWNIPAIDQHAHNLLQPKAIAHYPYAAAFTEAHHTDIINYHSCNTLFYRRSLRDMADLLKCEPQESEILAKRDNLGLE NLTKTCFNAANLETILLDDGFLPEEILPWQWHQQFVGVKRLLRIENLAQNLIPQVNSFGEFLERFRVEIDPPSQEVVGFK SIAAYRTGLEIQPVNIELAKSQFNTIKKNSGEKLPRLNHKSLIDFLIIQTLEIAAKYKMPIQFHTGFGDPDLDLRQSNPL HLRFLLEDNRFQNTPIILLHASYPYSREAGYLASVYPNVYISFGLAIPSLSIAGMKHVVRQLMDVAPISKLMYSSDAHLI PDLYYLGAKWGRKILAYVLEESVKDGDLTINEAEEIAVDVLRKNATDIYQLDM >Mature_373_residues MELWNIPAIDQHAHNLLQPKAIAHYPYAAAFTEAHHTDIINYHSCNTLFYRRSLRDMADLLKCEPQESEILAKRDNLGLE NLTKTCFNAANLETILLDDGFLPEEILPWQWHQQFVGVKRLLRIENLAQNLIPQVNSFGEFLERFRVEIDPPSQEVVGFK SIAAYRTGLEIQPVNIELAKSQFNTIKKNSGEKLPRLNHKSLIDFLIIQTLEIAAKYKMPIQFHTGFGDPDLDLRQSNPL HLRFLLEDNRFQNTPIILLHASYPYSREAGYLASVYPNVYISFGLAIPSLSIAGMKHVVRQLMDVAPISKLMYSSDAHLI PDLYYLGAKWGRKILAYVLEESVKDGDLTINEAEEIAVDVLRKNATDIYQLDM
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42675; Mature: 42675
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELWNIPAIDQHAHNLLQPKAIAHYPYAAAFTEAHHTDIINYHSCNTLFYRRSLRDMADL CCCCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH LKCEPQESEILAKRDNLGLENLTKTCFNAANLETILLDDGFLPEEILPWQWHQQFVGVKR HHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHH LLRIENLAQNLIPQVNSFGEFLERFRVEIDPPSQEVVGFKSIAAYRTGLEIQPVNIELAK HHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHHCCCEEEECCEEEHH SQFNTIKKNSGEKLPRLNHKSLIDFLIIQTLEIAAKYKMPIQFHTGFGDPDLDLRQSNPL HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCE HLRFLLEDNRFQNTPIILLHASYPYSREAGYLASVYPNVYISFGLAIPSLSIAGMKHVVR EEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEECCCEEEEECHHHCCHHHHHHHHHHH QLMDVAPISKLMYSSDAHLIPDLYYLGAKWGRKILAYVLEESVKDGDLTINEAEEIAVDV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHH LRKNATDIYQLDM HHCCCCCEEEECC >Mature Secondary Structure MELWNIPAIDQHAHNLLQPKAIAHYPYAAAFTEAHHTDIINYHSCNTLFYRRSLRDMADL CCCCCCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHH LKCEPQESEILAKRDNLGLENLTKTCFNAANLETILLDDGFLPEEILPWQWHQQFVGVKR HHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHH LLRIENLAQNLIPQVNSFGEFLERFRVEIDPPSQEVVGFKSIAAYRTGLEIQPVNIELAK HHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHHCCCEEEECCEEEHH SQFNTIKKNSGEKLPRLNHKSLIDFLIIQTLEIAAKYKMPIQFHTGFGDPDLDLRQSNPL HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCE HLRFLLEDNRFQNTPIILLHASYPYSREAGYLASVYPNVYISFGLAIPSLSIAGMKHVVR EEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEECCCEEEEECHHHCCHHHHHHHHHHH QLMDVAPISKLMYSSDAHLIPDLYYLGAKWGRKILAYVLEESVKDGDLTINEAEEIAVDV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHH LRKNATDIYQLDM HHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA