| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475385
Identifier: 113475385
GI number: 113475385
Start: 2600090
End: 2601229
Strand: Reverse
Name: 113475385
Synonym: Tery_1709
Alternate gene names: NA
Gene position: 2601229-2600090 (Counterclockwise)
Preceding gene: 113475392
Following gene: 113475384
Centisome position: 33.56
GC content: 34.82
Gene sequence:
>1140_bases GTGAATTGTTCCATAGTTAGTACAGGACAAAATATCCAATATTGGCAAAAAACAGGGCTAGAATTAGTTGCCAATATTTA TGGTGGACGAGATGTAGTATTAGCAATTGACTTAACAGAAAGTGTAGGCTTAAATGATGAAGGTCGTATCCGTTTGCGTC AGATCGTTAAAGATAGTTTGCGGCCTGGAGATAAAGTCTATGTTGTACCTTTTGCCACAAATATTAATCCTCTCGCACCA AGAATTAATCCCTTGACAGTTGAAGGGGCAGTTAAATTTAATGGCAAACAAGACATCAGTAAAATTTTGGAGTTAGTGCC ATTTAAGCCAAATTTAACTCTACAAAATACGGATATTCAAGGAGCAGAATTATTTCTTTATCAAAACCTAGCTCAGATTA ATCAATGTCGCTTAGAAAAAAATCAATCGATTAAACCTCAGTCGGTAATTTGGATTACTGATGCACCACTTTTAACTGCA GCAGGAATTGATTCAAATGTGTGGATAGAAACTCCTAAAGATAGCCCTTTTAGAGTAGAAAATTCTGAGGAAAGTCAACG GCGAATATCTTGGATAAATGCTTTACCTTTAGACGAGAGAAAGCTGTTAATTAGAACAGAAAATGGTGAAGAATATCAAC TAGCGGTTGTGGATATTGCTCCTACTGTTCAAGAATTTTGTACCCCAGCACCGGGAGGCAGGGAAACTTGTTTGGTTAAT TCTTATTTAGGGAAGTTATTATGGCTACCTGGGTTAATTTTTTTGTTGGTTTTTATAGGGTTTATAGTGGGAGTAAAAAA ATGGATAAGTCTGCAAAAAAAATGGGAGTTAATTGTTGATTTTAGTAGCAGTAAAATCGAGGAATACCAAATTTGTCGTT TGCCGAATAATAAAAAAATTGCTATTGGTGAATATGATGAATTTTGTGTTGATTCAATAGATACCCCCGGACCAGAAATT CGAGGTTTTTTAATCAGGAAAGGAAATCGACTTTCTCTAGAACCAACTGGGAATGCAGAAATTTATCTTAATGGGAAAAA AGTTTTGAGTCGTACTTTAATATCTAGTTCTCAAGTTAGGCTTAATTGTCCTGATGGAAGAAATCGCGATTATGAGATAA TTATCAAAATTAAAAAATAG
Upstream 100 bases:
>100_bases ATGTCTTATGTGACTATATTTTTTTGACCTATGATGGGTTATAGTTTAATTAATTCAATTATTAATCACCATTAACTCAT TTTCTAATTTTTTATTTGTA
Downstream 100 bases:
>100_bases TAAAGGTAAGTATTCAGGGTTCAGCTATTAGCTATTAGCTTTATTGTTTTTAAAGGAATAAAAAGCAATTGAGAGGTTTT AAAGAATTAAAAGTATGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MNCSIVSTGQNIQYWQKTGLELVANIYGGRDVVLAIDLTESVGLNDEGRIRLRQIVKDSLRPGDKVYVVPFATNINPLAP RINPLTVEGAVKFNGKQDISKILELVPFKPNLTLQNTDIQGAELFLYQNLAQINQCRLEKNQSIKPQSVIWITDAPLLTA AGIDSNVWIETPKDSPFRVENSEESQRRISWINALPLDERKLLIRTENGEEYQLAVVDIAPTVQEFCTPAPGGRETCLVN SYLGKLLWLPGLIFLLVFIGFIVGVKKWISLQKKWELIVDFSSSKIEEYQICRLPNNKKIAIGEYDEFCVDSIDTPGPEI RGFLIRKGNRLSLEPTGNAEIYLNGKKVLSRTLISSSQVRLNCPDGRNRDYEIIIKIKK
Sequences:
>Translated_379_residues MNCSIVSTGQNIQYWQKTGLELVANIYGGRDVVLAIDLTESVGLNDEGRIRLRQIVKDSLRPGDKVYVVPFATNINPLAP RINPLTVEGAVKFNGKQDISKILELVPFKPNLTLQNTDIQGAELFLYQNLAQINQCRLEKNQSIKPQSVIWITDAPLLTA AGIDSNVWIETPKDSPFRVENSEESQRRISWINALPLDERKLLIRTENGEEYQLAVVDIAPTVQEFCTPAPGGRETCLVN SYLGKLLWLPGLIFLLVFIGFIVGVKKWISLQKKWELIVDFSSSKIEEYQICRLPNNKKIAIGEYDEFCVDSIDTPGPEI RGFLIRKGNRLSLEPTGNAEIYLNGKKVLSRTLISSSQVRLNCPDGRNRDYEIIIKIKK >Mature_379_residues MNCSIVSTGQNIQYWQKTGLELVANIYGGRDVVLAIDLTESVGLNDEGRIRLRQIVKDSLRPGDKVYVVPFATNINPLAP RINPLTVEGAVKFNGKQDISKILELVPFKPNLTLQNTDIQGAELFLYQNLAQINQCRLEKNQSIKPQSVIWITDAPLLTA AGIDSNVWIETPKDSPFRVENSEESQRRISWINALPLDERKLLIRTENGEEYQLAVVDIAPTVQEFCTPAPGGRETCLVN SYLGKLLWLPGLIFLLVFIGFIVGVKKWISLQKKWELIVDFSSSKIEEYQICRLPNNKKIAIGEYDEFCVDSIDTPGPEI RGFLIRKGNRLSLEPTGNAEIYLNGKKVLSRTLISSSQVRLNCPDGRNRDYEIIIKIKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42713; Mature: 42713
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNCSIVSTGQNIQYWQKTGLELVANIYGGRDVVLAIDLTESVGLNDEGRIRLRQIVKDSL CCCEEEECCCCCHHHHHCCHHHHHHHCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHHHHC RPGDKVYVVPFATNINPLAPRINPLTVEGAVKFNGKQDISKILELVPFKPNLTLQNTDIQ CCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCCC GAELFLYQNLAQINQCRLEKNQSIKPQSVIWITDAPLLTAAGIDSNVWIETPKDSPFRVE CEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCEEEECCCCCCEEEC NSEESQRRISWINALPLDERKLLIRTENGEEYQLAVVDIAPTVQEFCTPAPGGRETCLVN CCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCHHHHHHCCCCCCCCCEEEHH SYLGKLLWLPGLIFLLVFIGFIVGVKKWISLQKKWELIVDFSSSKIEEYQICRLPNNKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCEE AIGEYDEFCVDSIDTPGPEIRGFLIRKGNRLSLEPTGNAEIYLNGKKVLSRTLISSSQVR EECCCHHHHHHCCCCCCHHHEEEEEECCCEEEECCCCCEEEEECHHHHHHHHHHCCCEEE LNCPDGRNRDYEIIIKIKK EECCCCCCCCEEEEEEEEC >Mature Secondary Structure MNCSIVSTGQNIQYWQKTGLELVANIYGGRDVVLAIDLTESVGLNDEGRIRLRQIVKDSL CCCEEEECCCCCHHHHHCCHHHHHHHCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHHHHC RPGDKVYVVPFATNINPLAPRINPLTVEGAVKFNGKQDISKILELVPFKPNLTLQNTDIQ CCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCCC GAELFLYQNLAQINQCRLEKNQSIKPQSVIWITDAPLLTAAGIDSNVWIETPKDSPFRVE CEEEEEHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEECCCCCCEEEECCCCCCEEEC NSEESQRRISWINALPLDERKLLIRTENGEEYQLAVVDIAPTVQEFCTPAPGGRETCLVN CCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCHHHHHHCCCCCCCCCEEEHH SYLGKLLWLPGLIFLLVFIGFIVGVKKWISLQKKWELIVDFSSSKIEEYQICRLPNNKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCEE AIGEYDEFCVDSIDTPGPEIRGFLIRKGNRLSLEPTGNAEIYLNGKKVLSRTLISSSQVR EECCCHHHHHHCCCCCCHHHEEEEEECCCEEEECCCCCEEEEECHHHHHHHHHHCCCEEE LNCPDGRNRDYEIIIKIKK EECCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA