| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475379
Identifier: 113475379
GI number: 113475379
Start: 2586415
End: 2586891
Strand: Reverse
Name: 113475379
Synonym: Tery_1702
Alternate gene names: NA
Gene position: 2586891-2586415 (Counterclockwise)
Preceding gene: 113475380
Following gene: 113475378
Centisome position: 33.38
GC content: 38.57
Gene sequence:
>477_bases ATGGGATATAGAGCACCTTCAGCAGAAGATATATATCGTTACCTATTTCGGTTAGACAATTATAGCCGATCGCTTACTGA TGGATTTTGTTTAAGTATTATTTTTGTGAATGATGACTCACCTGTATGCCAGGACTTGATTAGCCATTACTTTATAGATC TCTGTCACCGCACTGCTGATCGCATACGCATAATTTTCTTCTCAGAGCTTCCTGAAGCATATTTCGAGGATATTGCGTCT AGGATGAACTCTAATTCCTTTTCGGCTAAAAGACTACGTAACAATGGCCTTCTTAACCAAGTAATTGAGAGATTCTCTAG ATCAGACAGATATAGTATAGGAGAAATACTGAATGATTTTTGGGAAGCACTACACTGGCGAAACTACAACGAAGTAGATT TCTTTTTGTCAAGAATTTCTCAGAGGTTTGGCCCTACAGATCGCAGACGCCCTTTATCGTTTAGTTTGCCAACATAA
Upstream 100 bases:
>100_bases GAATAGCTAGGGTTGGATAGTACTTTCAGTCCTCTTCTATTCACAATCAAGTAATTAATCGAGTTGCCCTCTAAATATAA TTTGAGTAAGGATTACTTCG
Downstream 100 bases:
>100_bases AGATAATCCTGATACACAGCTCGAAGCAGGCATATACCAACTTATTGAGGAGATGAGAAGTCGTGAGTGGAGGACAAGGC GGAATCGCTTTCGACGAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MGYRAPSAEDIYRYLFRLDNYSRSLTDGFCLSIIFVNDDSPVCQDLISHYFIDLCHRTADRIRIIFFSELPEAYFEDIAS RMNSNSFSAKRLRNNGLLNQVIERFSRSDRYSIGEILNDFWEALHWRNYNEVDFFLSRISQRFGPTDRRRPLSFSLPT
Sequences:
>Translated_158_residues MGYRAPSAEDIYRYLFRLDNYSRSLTDGFCLSIIFVNDDSPVCQDLISHYFIDLCHRTADRIRIIFFSELPEAYFEDIAS RMNSNSFSAKRLRNNGLLNQVIERFSRSDRYSIGEILNDFWEALHWRNYNEVDFFLSRISQRFGPTDRRRPLSFSLPT >Mature_157_residues GYRAPSAEDIYRYLFRLDNYSRSLTDGFCLSIIFVNDDSPVCQDLISHYFIDLCHRTADRIRIIFFSELPEAYFEDIASR MNSNSFSAKRLRNNGLLNQVIERFSRSDRYSIGEILNDFWEALHWRNYNEVDFFLSRISQRFGPTDRRRPLSFSLPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18792; Mature: 18661
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYRAPSAEDIYRYLFRLDNYSRSLTDGFCLSIIFVNDDSPVCQDLISHYFIDLCHRTAD CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH RIRIIFFSELPEAYFEDIASRMNSNSFSAKRLRNNGLLNQVIERFSRSDRYSIGEILNDF HEEEHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH WEALHWRNYNEVDFFLSRISQRFGPTDRRRPLSFSLPT HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure GYRAPSAEDIYRYLFRLDNYSRSLTDGFCLSIIFVNDDSPVCQDLISHYFIDLCHRTAD CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH RIRIIFFSELPEAYFEDIASRMNSNSFSAKRLRNNGLLNQVIERFSRSDRYSIGEILNDF HEEEHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH WEALHWRNYNEVDFFLSRISQRFGPTDRRRPLSFSLPT HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA