| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475363
Identifier: 113475363
GI number: 113475363
Start: 2560492
End: 2561721
Strand: Reverse
Name: 113475363
Synonym: Tery_1680
Alternate gene names: NA
Gene position: 2561721-2560492 (Counterclockwise)
Preceding gene: 113475364
Following gene: 113475362
Centisome position: 33.05
GC content: 33.5
Gene sequence:
>1230_bases ATGAAAAAGCTACATAATTTAGCCATCAATTTAGGATTAATATTAGGTACATTAATATTTACTTTAACAGTAGGTGAAAT AGGATTAAGAATAGCAGGAATTAAGCATCCAGCGCCAAGAAAGGATGCAGATGAAAATCCTCTTCATACTTTCCAAGATC TATATAGAGGTTGGGCAGGAAAACCTCATGGGAAAGGGTTATGGAAGGAAGAGGGTGTTCCTTCCGAAATAAAAATGAAT AGTGCAGGATTTCGTGATTATGAACGGAGTAAAAATAAACCAGAAAATGGATTAAGAATTGCCTTATTAGGAGACTCTTA TACAGAAGCACTTCAGGTAAAATTAGAAGATACCTATGGTGCAATAATGGAGGAAAAATTACAACAATGTCCTGTGTTAA AAAACCGAAAAGTAGAAGTAATGAATTTTGGTGTAAGTGGTTATAGCACAGCCCAAGAATTAATGACTTTAAGGTATCAT GTTTGGGATTATCAACCAGATTTAGTCATGTTAGCTTTTTATGCAGGTAACGATCTTAGTAATAATTCTCCTAGTCTAGA ACATGACCATTTACGCCCTTATTTTGTTTACAAAGATGGGCAACTTGTAGCAGATATGTCATTTCGTAATTTGAAGTTTT GGCAGAGAAACCGTTATGCTTTTTCTCTGGTGGATTTTTTGCCATTTTGGTTAGTTAAAAATTCCCGAATTATGCAGCTA ATTAGAAAGGTAGATATTGATGCTAAACGCCGTCAGTATAACAAAGATTATAGGGAAATTAATATAGATTTTTATAAAGA ACCAAAACCAAATTCTGATTGGTCAGAAACTTGGGAAGTAACTGAGGGTTTAATTAAGCTAATGCGAGATGAAGTATATG AAAAAAAAGCAGACTTTATGATGATAACAGTCAGTCATTCTTCTCAAGTACTACCTGATATTCAACAGCGTAATAATTTG AAAAAATCTTTAAATGTGTCAAATTTATTCTACCCAGATATCAGACTGAAAAATTTTGGGAAAAAGGAAAATATACCAGT CTATAATTTAGCTGGTCCTATATGGGATGAGGCTAAAAAAACAGGTAAATGTTTCCATGGTTTTGATAATGCACTTCCCT GCGGTGGTCATTGGAACGTGGAAGGTCATAAATTGGTCGGGGAAATAATGGCAAATTATTTCTGCGATAAATATACTATT CCTAAATCATTTGTGAGAAAAAAAATGTAG
Upstream 100 bases:
>100_bases CATTATGTATTGGGCATTGGAACATAGAAGGGCATCAATTAGCAGGAGAAATTATTACTAATAACCTCTGCAAACAGTTC AAATTTAATTATAATCAATA
Downstream 100 bases:
>100_bases GTGTTTAGCTTCCAAATCCTATTTTTTGCAAAAAGCAATATGATTTTCTAGGTAAACTATTGGAACTATGCCCTTTTTGA TCAAATTTTGCTTGTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MKKLHNLAINLGLILGTLIFTLTVGEIGLRIAGIKHPAPRKDADENPLHTFQDLYRGWAGKPHGKGLWKEEGVPSEIKMN SAGFRDYERSKNKPENGLRIALLGDSYTEALQVKLEDTYGAIMEEKLQQCPVLKNRKVEVMNFGVSGYSTAQELMTLRYH VWDYQPDLVMLAFYAGNDLSNNSPSLEHDHLRPYFVYKDGQLVADMSFRNLKFWQRNRYAFSLVDFLPFWLVKNSRIMQL IRKVDIDAKRRQYNKDYREINIDFYKEPKPNSDWSETWEVTEGLIKLMRDEVYEKKADFMMITVSHSSQVLPDIQQRNNL KKSLNVSNLFYPDIRLKNFGKKENIPVYNLAGPIWDEAKKTGKCFHGFDNALPCGGHWNVEGHKLVGEIMANYFCDKYTI PKSFVRKKM
Sequences:
>Translated_409_residues MKKLHNLAINLGLILGTLIFTLTVGEIGLRIAGIKHPAPRKDADENPLHTFQDLYRGWAGKPHGKGLWKEEGVPSEIKMN SAGFRDYERSKNKPENGLRIALLGDSYTEALQVKLEDTYGAIMEEKLQQCPVLKNRKVEVMNFGVSGYSTAQELMTLRYH VWDYQPDLVMLAFYAGNDLSNNSPSLEHDHLRPYFVYKDGQLVADMSFRNLKFWQRNRYAFSLVDFLPFWLVKNSRIMQL IRKVDIDAKRRQYNKDYREINIDFYKEPKPNSDWSETWEVTEGLIKLMRDEVYEKKADFMMITVSHSSQVLPDIQQRNNL KKSLNVSNLFYPDIRLKNFGKKENIPVYNLAGPIWDEAKKTGKCFHGFDNALPCGGHWNVEGHKLVGEIMANYFCDKYTI PKSFVRKKM >Mature_409_residues MKKLHNLAINLGLILGTLIFTLTVGEIGLRIAGIKHPAPRKDADENPLHTFQDLYRGWAGKPHGKGLWKEEGVPSEIKMN SAGFRDYERSKNKPENGLRIALLGDSYTEALQVKLEDTYGAIMEEKLQQCPVLKNRKVEVMNFGVSGYSTAQELMTLRYH VWDYQPDLVMLAFYAGNDLSNNSPSLEHDHLRPYFVYKDGQLVADMSFRNLKFWQRNRYAFSLVDFLPFWLVKNSRIMQL IRKVDIDAKRRQYNKDYREINIDFYKEPKPNSDWSETWEVTEGLIKLMRDEVYEKKADFMMITVSHSSQVLPDIQQRNNL KKSLNVSNLFYPDIRLKNFGKKENIPVYNLAGPIWDEAKKTGKCFHGFDNALPCGGHWNVEGHKLVGEIMANYFCDKYTI PKSFVRKKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47492; Mature: 47492
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLHNLAINLGLILGTLIFTLTVGEIGLRIAGIKHPAPRKDADENPLHTFQDLYRGWAG CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC KPHGKGLWKEEGVPSEIKMNSAGFRDYERSKNKPENGLRIALLGDSYTEALQVKLEDTYG CCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEEEHHHHH AIMEEKLQQCPVLKNRKVEVMNFGVSGYSTAQELMTLRYHVWDYQPDLVMLAFYAGNDLS HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC NNSPSLEHDHLRPYFVYKDGQLVADMSFRNLKFWQRNRYAFSLVDFLPFWLVKNSRIMQL CCCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH IRKVDIDAKRRQYNKDYREINIDFYKEPKPNSDWSETWEVTEGLIKLMRDEVYEKKADFM HHHHCCCHHHHHHCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE MITVSHSSQVLPDIQQRNNLKKSLNVSNLFYPDIRLKNFGKKENIPVYNLAGPIWDEAKK EEEECCCCCCCCCHHHHCCHHHHCCCCCEECCCCEECCCCCCCCCCEEECCCCCHHHHHH TGKCFHGFDNALPCGGHWNVEGHKLVGEIMANYFCDKYTIPKSFVRKKM HCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCC >Mature Secondary Structure MKKLHNLAINLGLILGTLIFTLTVGEIGLRIAGIKHPAPRKDADENPLHTFQDLYRGWAG CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC KPHGKGLWKEEGVPSEIKMNSAGFRDYERSKNKPENGLRIALLGDSYTEALQVKLEDTYG CCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEEEHHHHH AIMEEKLQQCPVLKNRKVEVMNFGVSGYSTAQELMTLRYHVWDYQPDLVMLAFYAGNDLS HHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC NNSPSLEHDHLRPYFVYKDGQLVADMSFRNLKFWQRNRYAFSLVDFLPFWLVKNSRIMQL CCCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH IRKVDIDAKRRQYNKDYREINIDFYKEPKPNSDWSETWEVTEGLIKLMRDEVYEKKADFM HHHHCCCHHHHHHCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE MITVSHSSQVLPDIQQRNNLKKSLNVSNLFYPDIRLKNFGKKENIPVYNLAGPIWDEAKK EEEECCCCCCCCCHHHHCCHHHHCCCCCEECCCCEECCCCCCCCCCEEECCCCCHHHHHH TGKCFHGFDNALPCGGHWNVEGHKLVGEIMANYFCDKYTIPKSFVRKKM HCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA