| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475362
Identifier: 113475362
GI number: 113475362
Start: 2558466
End: 2559689
Strand: Reverse
Name: 113475362
Synonym: Tery_1679
Alternate gene names: NA
Gene position: 2559689-2558466 (Counterclockwise)
Preceding gene: 113475363
Following gene: 113475361
Centisome position: 33.03
GC content: 33.09
Gene sequence:
>1224_bases ATGAAAAAATTGAAGAATTTAGTCATTAATTTAGGACTCACACTCACTACATTAATATTTACTGTTGCAGTAGGTGAAAT AGGCCTAAGAACAGCAGGAATTGAGAATTCCCCACCACCAAGAATAGACGGGGAATTAGATGAGAATTCTCCCTACACTT TCAAAGACTATTACCGAGGTTGGGCAGGAAATGCTAACGGCAAATCATTTTGGACCGGAGAAGGTATACCTTCGGAAATT AAAATGAATAGTGGAGGGTTTCGAGATTATGAACGTAGTAAAAACAAACCAGAAAATGGTTTAAGAATTGCTTTATTAGG AGATTCTTTTACAGAAGCAATTCATGTAAAATTAGAAGATACTTATGGTGCAATAATAGAACAAAATTTACAACAATGTC CTGTCGTAAAAGACCAGAAAGTTGAAGTAATGAATTTTGGAGTACAGGGTTATGGAACAGCTCAAGAATTAATGACATTA AGACATCATGTTTGGGATTATTCACCAGATTTAGTTATATTAGTTTTTTTTGCTGCTAACGACCTTCGTAATAATTCTCG TACTTTAGAACATGACCATTTAAGACCCTATTTTATCTATCAAGACGGTCAACTTGTGACAGATATGTCATTCCGCGATT TAAAATTTTGGCAGAGAGATCGTTATGCTTTTTCCCTAGTAGATTTTTTACCATTTTGGTTAGTGCAAAATTCTCGAATT TTACAACTAATTAGAAAAGTAGAACTTGATGGTAAATACCGTCAGTATCAAAAAGACTATAGTGAAATTAATCTAGCTTT TTATAAAAAGCCACAACCAAATTCTGATTGGGAAAAAACCTGGAAAGTGACTGAAAGTTTGATTAAATTAATGAGAGATG AAGTCTCTGAAAAAGGAGCAGATTTTATGTTGATAACAGCGAGTGATTCTCATCAAGTTTTACCAGATATTGAAAGGCGT GATGGATTTAGAAAATCTTTGAATGTATCAAATTTATTTTATCCAGATATCAGACTAAAAAATTTTGGGAAAAAGGAAAA TATACCAGTTTATACTTTAGCGGGACCCATTTGGGATGAAGCTAAAAAAACAGGTAAATGTTTACATGGGTTTGATAATG CAATTCCCTGTGGAGGTCATTGGAATGTAGCAGGTCATAAATTTGTAGGAGAAATAATGGGAAATTATTTATGCCAAAGA TATACTGCTCTACTCAAAAAATAA
Upstream 100 bases:
>100_bases TTGTTTATTTTATATTTTCAGGTACTATATATAATTTAGTTTTAACTAAATTTCTTCTCAAGATTAAAAATAATCTCTTG CTCAACTAACCTTATATATA
Downstream 100 bases:
>100_bases TAAAGGAGGTATAAGGGAAAATCTTTATTTATTTATGGGGTTTGTTATAGGTGCTTGAGGCCTAGGAAAGTTGGGTCTTG AAATAGTTATTTTTTCTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 407
Protein sequence:
>407_residues MKKLKNLVINLGLTLTTLIFTVAVGEIGLRTAGIENSPPPRIDGELDENSPYTFKDYYRGWAGNANGKSFWTGEGIPSEI KMNSGGFRDYERSKNKPENGLRIALLGDSFTEAIHVKLEDTYGAIIEQNLQQCPVVKDQKVEVMNFGVQGYGTAQELMTL RHHVWDYSPDLVILVFFAANDLRNNSRTLEHDHLRPYFIYQDGQLVTDMSFRDLKFWQRDRYAFSLVDFLPFWLVQNSRI LQLIRKVELDGKYRQYQKDYSEINLAFYKKPQPNSDWEKTWKVTESLIKLMRDEVSEKGADFMLITASDSHQVLPDIERR DGFRKSLNVSNLFYPDIRLKNFGKKENIPVYTLAGPIWDEAKKTGKCLHGFDNAIPCGGHWNVAGHKFVGEIMGNYLCQR YTALLKK
Sequences:
>Translated_407_residues MKKLKNLVINLGLTLTTLIFTVAVGEIGLRTAGIENSPPPRIDGELDENSPYTFKDYYRGWAGNANGKSFWTGEGIPSEI KMNSGGFRDYERSKNKPENGLRIALLGDSFTEAIHVKLEDTYGAIIEQNLQQCPVVKDQKVEVMNFGVQGYGTAQELMTL RHHVWDYSPDLVILVFFAANDLRNNSRTLEHDHLRPYFIYQDGQLVTDMSFRDLKFWQRDRYAFSLVDFLPFWLVQNSRI LQLIRKVELDGKYRQYQKDYSEINLAFYKKPQPNSDWEKTWKVTESLIKLMRDEVSEKGADFMLITASDSHQVLPDIERR DGFRKSLNVSNLFYPDIRLKNFGKKENIPVYTLAGPIWDEAKKTGKCLHGFDNAIPCGGHWNVAGHKFVGEIMGNYLCQR YTALLKK >Mature_407_residues MKKLKNLVINLGLTLTTLIFTVAVGEIGLRTAGIENSPPPRIDGELDENSPYTFKDYYRGWAGNANGKSFWTGEGIPSEI KMNSGGFRDYERSKNKPENGLRIALLGDSFTEAIHVKLEDTYGAIIEQNLQQCPVVKDQKVEVMNFGVQGYGTAQELMTL RHHVWDYSPDLVILVFFAANDLRNNSRTLEHDHLRPYFIYQDGQLVTDMSFRDLKFWQRDRYAFSLVDFLPFWLVQNSRI LQLIRKVELDGKYRQYQKDYSEINLAFYKKPQPNSDWEKTWKVTESLIKLMRDEVSEKGADFMLITASDSHQVLPDIERR DGFRKSLNVSNLFYPDIRLKNFGKKENIPVYTLAGPIWDEAKKTGKCLHGFDNAIPCGGHWNVAGHKFVGEIMGNYLCQR YTALLKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46891; Mature: 46891
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLKNLVINLGLTLTTLIFTVAVGEIGLRTAGIENSPPPRIDGELDENSPYTFKDYYRG CCHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC WAGNANGKSFWTGEGIPSEIKMNSGGFRDYERSKNKPENGLRIALLGDSFTEAIHVKLED CCCCCCCCEEECCCCCCCCEEECCCCCCCHHHCCCCCCCCEEEEEECCCCCEEEEEEEEC TYGAIIEQNLQQCPVVKDQKVEVMNFGVQGYGTAQELMTLRHHVWDYSPDLVILVFFAAN HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHH DLRNNSRTLEHDHLRPYFIYQDGQLVTDMSFRDLKFWQRDRYAFSLVDFLPFWLVQNSRI HHCCCCCCCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LQLIRKVELDGKYRQYQKDYSEINLAFYKKPQPNSDWEKTWKVTESLIKLMRDEVSEKGA HHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DFMLITASDSHQVLPDIERRDGFRKSLNVSNLFYPDIRLKNFGKKENIPVYTLAGPIWDE CEEEEEECCCCCCCCCCHHCCCHHHCCCCCCEECCCCEECCCCCCCCCCEEEECCCCHHH AKKTGKCLHGFDNAIPCGGHWNVAGHKFVGEIMGNYLCQRYTALLKK HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKLKNLVINLGLTLTTLIFTVAVGEIGLRTAGIENSPPPRIDGELDENSPYTFKDYYRG CCHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC WAGNANGKSFWTGEGIPSEIKMNSGGFRDYERSKNKPENGLRIALLGDSFTEAIHVKLED CCCCCCCCEEECCCCCCCCEEECCCCCCCHHHCCCCCCCCEEEEEECCCCCEEEEEEEEC TYGAIIEQNLQQCPVVKDQKVEVMNFGVQGYGTAQELMTLRHHVWDYSPDLVILVFFAAN HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHH DLRNNSRTLEHDHLRPYFIYQDGQLVTDMSFRDLKFWQRDRYAFSLVDFLPFWLVQNSRI HHCCCCCCCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LQLIRKVELDGKYRQYQKDYSEINLAFYKKPQPNSDWEKTWKVTESLIKLMRDEVSEKGA HHHHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DFMLITASDSHQVLPDIERRDGFRKSLNVSNLFYPDIRLKNFGKKENIPVYTLAGPIWDE CEEEEEECCCCCCCCCCHHCCCHHHCCCCCCEECCCCEECCCCCCCCCCEEEECCCCHHH AKKTGKCLHGFDNAIPCGGHWNVAGHKFVGEIMGNYLCQRYTALLKK HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA