| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475355
Identifier: 113475355
GI number: 113475355
Start: 2546360
End: 2547577
Strand: Direct
Name: 113475355
Synonym: Tery_1672
Alternate gene names: NA
Gene position: 2546360-2547577 (Clockwise)
Preceding gene: 113475353
Following gene: 113475358
Centisome position: 32.86
GC content: 29.23
Gene sequence:
>1218_bases ATGGGTAATTATTTCCAATTCATTAAACCGAAAAAAATCAAATTTTTTTTATTATTAACATTTACATGGATAATTATACC TCTACTATTGGTAGAAATTTTGATGATTTTTTTTGAACCATACCTATTTAAAGGGCTGTATCAATATGACCCAGATCTAG GCTTTCGAGTGCGGCCTTATATGAATGGCAATAATCAATTTGGCTTCAACGACCGAGATTATCCTTTAGAAAAAAACCAA AATAAATTTCGTCTGCTAGTTGTTAGTGACTCCTTTAATTGGGCAGGTGGAAAAGAAGGAAATTATACGGCTTTATTGGA GAAAAAATTTGATAGTTATTTTGGTAAAAGTCAGGTAGAGGTAATTAATGTTGGCTATCCAGGAACTCATACTGGTGAGC AACTAGCTATGTTGAAAAAGTTTGGATTACAATATAATCCAAACTTAGTAGTATTAGGCTTTTTTGTCGGTAATGATTTT CAGGATGCTAACCCAAAAAGGAAACGCATTATTGTCAATGATATATATATAGATATAGATAAGAAAGACGAGTTAATTAT TTTTGGTTATCCAATTATTGGTAAGTCTAGATTACTAATGTTTTTACAGCAAAAATATCAAGTTTACCAAAAATTACAAA AGGGTAAACAGGATTCTGTAAAGTTACTAAGTAGTTCTCTAGCTCCTAGTTTAAATTTAGGATCAAATCTAATAATTGAC AGGGAAAAATCTCCGGGAATTTTATCTAATAAAGCTTTTCTAAGAGTAGAAAAAAGCCGGCTTAAGTTTTGTAATATTAA AGATTTAATTGATGGTAAATGGGATGAGAATATCAACTATATTTTTCACAGTATTTTAGAGATGCAAAAATTACTAAAAT CTCGGAATATTGAATTTATAGTCGCTATTTATCCTGACGAATATCAAGTTAATGAGAAGTTATTAAATGAAATATTTGCA GAGTATGATAATTTACAACGAGAGTTTTATAATTTGACTTGTCAGCAAGAAATTTTGAGCAAATTTTTAGAAGTTAATGG CATCCCTTATATAGATATGTTGGATAGATTTAAAATCGAACAAAATACCCGTCATTTATACTTGCTTAGGGAACCCCATT GGAATAGTGCTGGAAATTTATTAGCTGCAAATATTTTATTCAATCATTTAGTTAAAGATATAAATAAATTTTTTTTTGAA AAACCTCTCTCCCTATAG
Upstream 100 bases:
>100_bases CAGCAGGAAGCTTGAGACCTTATTGTTTTGGTCATCAGATTTTTAGTAATTTTGATTAGTATGTTATATTATCCCAGATT TATAACTTAGTTGTCATTTT
Downstream 100 bases:
>100_bases ATCCAGAGGTCGAATTAAACCAGGCTAATTTTTTCCATTCAATTTTTTGGTTTTGACGATTCATTTGGCTTAACTCTAAA AGTTCTTTCCGTGATAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MGNYFQFIKPKKIKFFLLLTFTWIIIPLLLVEILMIFFEPYLFKGLYQYDPDLGFRVRPYMNGNNQFGFNDRDYPLEKNQ NKFRLLVVSDSFNWAGGKEGNYTALLEKKFDSYFGKSQVEVINVGYPGTHTGEQLAMLKKFGLQYNPNLVVLGFFVGNDF QDANPKRKRIIVNDIYIDIDKKDELIIFGYPIIGKSRLLMFLQQKYQVYQKLQKGKQDSVKLLSSSLAPSLNLGSNLIID REKSPGILSNKAFLRVEKSRLKFCNIKDLIDGKWDENINYIFHSILEMQKLLKSRNIEFIVAIYPDEYQVNEKLLNEIFA EYDNLQREFYNLTCQQEILSKFLEVNGIPYIDMLDRFKIEQNTRHLYLLREPHWNSAGNLLAANILFNHLVKDINKFFFE KPLSL
Sequences:
>Translated_405_residues MGNYFQFIKPKKIKFFLLLTFTWIIIPLLLVEILMIFFEPYLFKGLYQYDPDLGFRVRPYMNGNNQFGFNDRDYPLEKNQ NKFRLLVVSDSFNWAGGKEGNYTALLEKKFDSYFGKSQVEVINVGYPGTHTGEQLAMLKKFGLQYNPNLVVLGFFVGNDF QDANPKRKRIIVNDIYIDIDKKDELIIFGYPIIGKSRLLMFLQQKYQVYQKLQKGKQDSVKLLSSSLAPSLNLGSNLIID REKSPGILSNKAFLRVEKSRLKFCNIKDLIDGKWDENINYIFHSILEMQKLLKSRNIEFIVAIYPDEYQVNEKLLNEIFA EYDNLQREFYNLTCQQEILSKFLEVNGIPYIDMLDRFKIEQNTRHLYLLREPHWNSAGNLLAANILFNHLVKDINKFFFE KPLSL >Mature_404_residues GNYFQFIKPKKIKFFLLLTFTWIIIPLLLVEILMIFFEPYLFKGLYQYDPDLGFRVRPYMNGNNQFGFNDRDYPLEKNQN KFRLLVVSDSFNWAGGKEGNYTALLEKKFDSYFGKSQVEVINVGYPGTHTGEQLAMLKKFGLQYNPNLVVLGFFVGNDFQ DANPKRKRIIVNDIYIDIDKKDELIIFGYPIIGKSRLLMFLQQKYQVYQKLQKGKQDSVKLLSSSLAPSLNLGSNLIIDR EKSPGILSNKAFLRVEKSRLKFCNIKDLIDGKWDENINYIFHSILEMQKLLKSRNIEFIVAIYPDEYQVNEKLLNEIFAE YDNLQREFYNLTCQQEILSKFLEVNGIPYIDMLDRFKIEQNTRHLYLLREPHWNSAGNLLAANILFNHLVKDINKFFFEK PLSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47638; Mature: 47507
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNYFQFIKPKKIKFFLLLTFTWIIIPLLLVEILMIFFEPYLFKGLYQYDPDLGFRVRPY CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE MNGNNQFGFNDRDYPLEKNQNKFRLLVVSDSFNWAGGKEGNYTALLEKKFDSYFGKSQVE ECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEE VINVGYPGTHTGEQLAMLKKFGLQYNPNLVVLGFFVGNDFQDANPKRKRIIVNDIYIDID EEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEC KKDELIIFGYPIIGKSRLLMFLQQKYQVYQKLQKGKQDSVKLLSSSLAPSLNLGSNLIID CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEE REKSPGILSNKAFLRVEKSRLKFCNIKDLIDGKWDENINYIFHSILEMQKLLKSRNIEFI CCCCCCEECCCEEEEEEHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE VAIYPDEYQVNEKLLNEIFAEYDNLQREFYNLTCQQEILSKFLEVNGIPYIDMLDRFKIE EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHEEC QNTRHLYLLREPHWNSAGNLLAANILFNHLVKDINKFFFEKPLSL CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GNYFQFIKPKKIKFFLLLTFTWIIIPLLLVEILMIFFEPYLFKGLYQYDPDLGFRVRPY CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE MNGNNQFGFNDRDYPLEKNQNKFRLLVVSDSFNWAGGKEGNYTALLEKKFDSYFGKSQVE ECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCEE VINVGYPGTHTGEQLAMLKKFGLQYNPNLVVLGFFVGNDFQDANPKRKRIIVNDIYIDID EEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEC KKDELIIFGYPIIGKSRLLMFLQQKYQVYQKLQKGKQDSVKLLSSSLAPSLNLGSNLIID CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEE REKSPGILSNKAFLRVEKSRLKFCNIKDLIDGKWDENINYIFHSILEMQKLLKSRNIEFI CCCCCCEECCCEEEEEEHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE VAIYPDEYQVNEKLLNEIFAEYDNLQREFYNLTCQQEILSKFLEVNGIPYIDMLDRFKIE EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHEEC QNTRHLYLLREPHWNSAGNLLAANILFNHLVKDINKFFFEKPLSL CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA