| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475132
Identifier: 113475132
GI number: 113475132
Start: 2157109
End: 2158074
Strand: Reverse
Name: 113475132
Synonym: Tery_1424
Alternate gene names: NA
Gene position: 2158074-2157109 (Counterclockwise)
Preceding gene: 113475133
Following gene: 113475131
Centisome position: 27.85
GC content: 28.78
Gene sequence:
>966_bases ATGAGTTCAACTGAAGCAATAATATTTTCTATTTTAAACCGAGATAACATTACACAACTGGAATTAATTTTCCAAAGATT ATTTCAGCAATTTGATTCTATTTCTGGAAGGCGAGCATTTTTACAGTTAGCGGGAATAGATGACTATTTTATAAATGGCC GAGATTTTAATTTACCTCCTCAGCAATTTATAACTATATTAGTTGCTGACTTAAAAAGTTATAGAATCTCTCGACAAAAT CCTTATTATCATCCACTGTTATTCATTATAGACTATGTAATTAATCAACCTAGAGAAAAATTTTATCATTTAGATGATCG AGATATTGAATATTTAGCAACGTTTCGGAAAAGGGGAGATTTACAAATTAAAATATATCTGCAAAATCAATCTCCTGAAA CAATAAAACGTAATACTCAAAATTTAGATATTTACTTGAATAAAATTGAGAAAAATCTCAAAAATCAAGGTGCTTTAGAT ATACAAAATAACGTTCTAAGTAAAGATAGAAAGTTTGAATTTGAGCGTGTAGCAAAAATCACTGATTTTGAACTTCATTT CGATGCATTTAATATGAGAGGAGATGCGTTTTTTATCATCGATTATTTTCCCTCTATAAATACAAAAAGTTTAAGACAGT ATTCTACTCAATGCCTAGAATATGGAAAAGATAAAGCTACTTCATCTGTTGGCACACAAATTTTAAATGCTAGGGTACCT TGTAATATTTGTTTTGCTATAGCTGTGGTTAAAAACTTAGACAAAGAAACTAAAATTAAAATACGTCAAGAAAATCCTTT CGATCAAAATCTAGATTTATTATGGTACGAAGTTCCTGTTATTTATTGTTTAGATGAAAAAATACTTTATTTTTATGACC AACCTTCATCATTCTGGGAAAAATTTAAGGGAGAAGTAGTATGGACAAGGTTGAGAGAAGTCATTGAAACGACTTTAACA CCTTAA
Upstream 100 bases:
>100_bases AGGAGAGGATGTCAAAACAATCCCAGAGTCAATCTCTCAACTCTCTAATTTACAGAGCTTGATTTAGAAGATAATTAATA CCCTAATTAAGGAGAAAATA
Downstream 100 bases:
>100_bases TATACTTCTTAGGTCAACAATTTATTTTGTAGATAGCTGCTAAAATTTAAAACATCAATAATGGAAGAAAAGTCAAATGC CAAACACCCGTATATTCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MSSTEAIIFSILNRDNITQLELIFQRLFQQFDSISGRRAFLQLAGIDDYFINGRDFNLPPQQFITILVADLKSYRISRQN PYYHPLLFIIDYVINQPREKFYHLDDRDIEYLATFRKRGDLQIKIYLQNQSPETIKRNTQNLDIYLNKIEKNLKNQGALD IQNNVLSKDRKFEFERVAKITDFELHFDAFNMRGDAFFIIDYFPSINTKSLRQYSTQCLEYGKDKATSSVGTQILNARVP CNICFAIAVVKNLDKETKIKIRQENPFDQNLDLLWYEVPVIYCLDEKILYFYDQPSSFWEKFKGEVVWTRLREVIETTLT P
Sequences:
>Translated_321_residues MSSTEAIIFSILNRDNITQLELIFQRLFQQFDSISGRRAFLQLAGIDDYFINGRDFNLPPQQFITILVADLKSYRISRQN PYYHPLLFIIDYVINQPREKFYHLDDRDIEYLATFRKRGDLQIKIYLQNQSPETIKRNTQNLDIYLNKIEKNLKNQGALD IQNNVLSKDRKFEFERVAKITDFELHFDAFNMRGDAFFIIDYFPSINTKSLRQYSTQCLEYGKDKATSSVGTQILNARVP CNICFAIAVVKNLDKETKIKIRQENPFDQNLDLLWYEVPVIYCLDEKILYFYDQPSSFWEKFKGEVVWTRLREVIETTLT P >Mature_320_residues SSTEAIIFSILNRDNITQLELIFQRLFQQFDSISGRRAFLQLAGIDDYFINGRDFNLPPQQFITILVADLKSYRISRQNP YYHPLLFIIDYVINQPREKFYHLDDRDIEYLATFRKRGDLQIKIYLQNQSPETIKRNTQNLDIYLNKIEKNLKNQGALDI QNNVLSKDRKFEFERVAKITDFELHFDAFNMRGDAFFIIDYFPSINTKSLRQYSTQCLEYGKDKATSSVGTQILNARVPC NICFAIAVVKNLDKETKIKIRQENPFDQNLDLLWYEVPVIYCLDEKILYFYDQPSSFWEKFKGEVVWTRLREVIETTLTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38053; Mature: 37922
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTEAIIFSILNRDNITQLELIFQRLFQQFDSISGRRAFLQLAGIDDYFINGRDFNLPP CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCH QQFITILVADLKSYRISRQNPYYHPLLFIIDYVINQPREKFYHLDDRDIEYLATFRKRGD HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCC LQIKIYLQNQSPETIKRNTQNLDIYLNKIEKNLKNQGALDIQNNVLSKDRKFEFERVAKI EEEEEEEECCCCHHHHCCCCCHHEEHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHH TDFELHFDAFNMRGDAFFIIDYFPSINTKSLRQYSTQCLEYGKDKATSSVGTQILNARVP CCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC CNICFAIAVVKNLDKETKIKIRQENPFDQNLDLLWYEVPVIYCLDEKILYFYDQPSSFWE HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCEEEEECCEEEEEECCCHHHHH KFKGEVVWTRLREVIETTLTP HHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SSTEAIIFSILNRDNITQLELIFQRLFQQFDSISGRRAFLQLAGIDDYFINGRDFNLPP CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCH QQFITILVADLKSYRISRQNPYYHPLLFIIDYVINQPREKFYHLDDRDIEYLATFRKRGD HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCC LQIKIYLQNQSPETIKRNTQNLDIYLNKIEKNLKNQGALDIQNNVLSKDRKFEFERVAKI EEEEEEEECCCCHHHHCCCCCHHEEHHHHHHHHHCCCCEEEHHHHHCCCCCCCHHHHHHH TDFELHFDAFNMRGDAFFIIDYFPSINTKSLRQYSTQCLEYGKDKATSSVGTQILNARVP CCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC CNICFAIAVVKNLDKETKIKIRQENPFDQNLDLLWYEVPVIYCLDEKILYFYDQPSSFWE HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCEEEEECCEEEEEECCCHHHHH KFKGEVVWTRLREVIETTLTP HHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA