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The map label for this gene is ydcM [C]

Identifier: 113475133

GI number: 113475133

Start: 2158202

End: 2159509

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_1425

Alternate gene names: 113475133

Gene position: 2159509-2158202 (Counterclockwise)

Preceding gene: 113475134

Following gene: 113475132

Centisome position: 27.86

GC content: 33.33

Gene sequence:

>1308_bases
TTGAAACTAAGATATAAATATAGGTGCTATCCAAACCTTATACAAAAAATTAATTTAGCTAAATTATTTGGATGTACAAG
AGTAGTTTGGAATGATGGGTTAGCCTATTGTATTCAAGAATTTAAATCAACTAAGAAAAAGCCAACTAATTCCGAACTTC
AAAAAGTCTTTATTACTCAAGCTAAAAAGACAATTGAGAGAAGTTGGCTAACCGAAATATCCGTAGTTCCATTGCAACAA
TCCTTAAACGATTTACATCAAGCTTATCAAAACTTTTTTAACTCAGCAACAGGTAAGCGTAAAGGAATGAAAATTAAATC
TCCTAAATTCAAGAAGCGCAAGTCAAAACAGACTGCTAGGTTTACAAAAATAGGGTTTAAGCTAAGTCAAGATAAGGTAT
ATTTAGCCAAAATAGGTAAAATAAAAGTTGCTTGGTCAAGACCCTTACCTATTGAACCTACATCAGTCACAATAATTAAG
GATTCAGCTAATAGATATTTTCTGAGTTTTGTAATAGAAACATCTGCTGAAACATTACCCAAAACTGATAATTCTATTGG
AATTGATTTGGGAATTTCTACTTTTGCTACATTGAATAATGGTCAGAAATTTGAAGCTCCTAAACCACTTAAGAAAAATC
TCAAAAAATTAGCTAAGTTTCAACGCCAGCTTGCTCAGAAAATACCAGGTAGTAAGCGTAGAGAAAAAGCTAAATTAAGG
GTAGCTAAACTTCATGCTAAAATCACAGACATTAGAACTGATTTTCTTCATCAACTATCCACTAAGTTAATTCGCGAATA
CGACACAATAGTATTAGAAGACTTAAATGTTTCTGGTATGGTTAAAAACAGAAAACTAGCTAAGGCTATTTCTGATTTAG
GATGGAGAATGTTTAGGACATTATTAGAAACTAAATGTCAAAAATATGGTCGTGAGTTTAGAGTTATTAACAGATGGGAA
CCTACGAGTCAAAAATGCTCTCATTGTGGGTTTCGTGGAGGTAAAAAGGAATTAAATGTTAGAGAGTGGAATTGTTTGAA
ATGTGGCACACACCATGACCGTGATGTTAATGCTGCTGTAAATATTTTAGAAGTTGTTCAACTGAGAACCAAGGTTGAAG
TAATTGAAACTAAAGTATTAGAAAATCCTGTACAATTATCTCTTTTCAATATAGTCGCCGACGGTCAGTCGGAGACTGAA
CAAAAACGAGCATTGAGCAAAGGTAAGACTTGCCGTAAAAAGCCAGCTAATTGTGATGAAATGCTAACCCGCTTTGAGTC
TTTCAAGCAGCTTAATCTGTTTGATTGA

Upstream 100 bases:

>100_bases
GACTTATAAATTAAAAAATATCTGCAAAGTCAATATAATATAAATCTCAAAGAGCTACGCTGTTAATATTTAGTGTAAAT
AATTGATAGGACTCAAAAAA

Downstream 100 bases:

>100_bases
TAGATAAGAATCTCCTCGGCTTTAGGCAGGAGAGGATGTCAAAACAATCCCAGAGTCAATCTCTCAACTCTCTAATTTAC
AGAGCTTGATTTAGAAGATA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKLRYKYRCYPNLIQKINLAKLFGCTRVVWNDGLAYCIQEFKSTKKKPTNSELQKVFITQAKKTIERSWLTEISVVPLQQ
SLNDLHQAYQNFFNSATGKRKGMKIKSPKFKKRKSKQTARFTKIGFKLSQDKVYLAKIGKIKVAWSRPLPIEPTSVTIIK
DSANRYFLSFVIETSAETLPKTDNSIGIDLGISTFATLNNGQKFEAPKPLKKNLKKLAKFQRQLAQKIPGSKRREKAKLR
VAKLHAKITDIRTDFLHQLSTKLIREYDTIVLEDLNVSGMVKNRKLAKAISDLGWRMFRTLLETKCQKYGREFRVINRWE
PTSQKCSHCGFRGGKKELNVREWNCLKCGTHHDRDVNAAVNILEVVQLRTKVEVIETKVLENPVQLSLFNIVADGQSETE
QKRALSKGKTCRKKPANCDEMLTRFESFKQLNLFD

Sequences:

>Translated_435_residues
MKLRYKYRCYPNLIQKINLAKLFGCTRVVWNDGLAYCIQEFKSTKKKPTNSELQKVFITQAKKTIERSWLTEISVVPLQQ
SLNDLHQAYQNFFNSATGKRKGMKIKSPKFKKRKSKQTARFTKIGFKLSQDKVYLAKIGKIKVAWSRPLPIEPTSVTIIK
DSANRYFLSFVIETSAETLPKTDNSIGIDLGISTFATLNNGQKFEAPKPLKKNLKKLAKFQRQLAQKIPGSKRREKAKLR
VAKLHAKITDIRTDFLHQLSTKLIREYDTIVLEDLNVSGMVKNRKLAKAISDLGWRMFRTLLETKCQKYGREFRVINRWE
PTSQKCSHCGFRGGKKELNVREWNCLKCGTHHDRDVNAAVNILEVVQLRTKVEVIETKVLENPVQLSLFNIVADGQSETE
QKRALSKGKTCRKKPANCDEMLTRFESFKQLNLFD
>Mature_435_residues
MKLRYKYRCYPNLIQKINLAKLFGCTRVVWNDGLAYCIQEFKSTKKKPTNSELQKVFITQAKKTIERSWLTEISVVPLQQ
SLNDLHQAYQNFFNSATGKRKGMKIKSPKFKKRKSKQTARFTKIGFKLSQDKVYLAKIGKIKVAWSRPLPIEPTSVTIIK
DSANRYFLSFVIETSAETLPKTDNSIGIDLGISTFATLNNGQKFEAPKPLKKNLKKLAKFQRQLAQKIPGSKRREKAKLR
VAKLHAKITDIRTDFLHQLSTKLIREYDTIVLEDLNVSGMVKNRKLAKAISDLGWRMFRTLLETKCQKYGREFRVINRWE
PTSQKCSHCGFRGGKKELNVREWNCLKCGTHHDRDVNAAVNILEVVQLRTKVEVIETKVLENPVQLSLFNIVADGQSETE
QKRALSKGKTCRKKPANCDEMLTRFESFKQLNLFD

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=364, Percent_Identity=31.5934065934066, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50170; Mature: 50170

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRYKYRCYPNLIQKINLAKLFGCTRVVWNDGLAYCIQEFKSTKKKPTNSELQKVFITQ
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
AKKTIERSWLTEISVVPLQQSLNDLHQAYQNFFNSATGKRKGMKIKSPKFKKRKSKQTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
FTKIGFKLSQDKVYLAKIGKIKVAWSRPLPIEPTSVTIIKDSANRYFLSFVIETSAETLP
HHHHCCEECCCCEEEEEECEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEHHHHHHCC
KTDNSIGIDLGISTFATLNNGQKFEAPKPLKKNLKKLAKFQRQLAQKIPGSKRREKAKLR
CCCCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VAKLHAKITDIRTDFLHQLSTKLIREYDTIVLEDLNVSGMVKNRKLAKAISDLGWRMFRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
LLETKCQKYGREFRVINRWEPTSQKCSHCGFRGGKKELNVREWNCLKCGTHHDRDVNAAV
HHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH
NILEVVQLRTKVEVIETKVLENPVQLSLFNIVADGQSETEQKRALSKGKTCRKKPANCDE
HHHHHHHHHHHHHHHHHHHHCCCHHEEEEHEEECCCCHHHHHHHHHCCCCCCCCCCCHHH
MLTRFESFKQLNLFD
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLRYKYRCYPNLIQKINLAKLFGCTRVVWNDGLAYCIQEFKSTKKKPTNSELQKVFITQ
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
AKKTIERSWLTEISVVPLQQSLNDLHQAYQNFFNSATGKRKGMKIKSPKFKKRKSKQTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
FTKIGFKLSQDKVYLAKIGKIKVAWSRPLPIEPTSVTIIKDSANRYFLSFVIETSAETLP
HHHHCCEECCCCEEEEEECEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEHHHHHHCC
KTDNSIGIDLGISTFATLNNGQKFEAPKPLKKNLKKLAKFQRQLAQKIPGSKRREKAKLR
CCCCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VAKLHAKITDIRTDFLHQLSTKLIREYDTIVLEDLNVSGMVKNRKLAKAISDLGWRMFRT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
LLETKCQKYGREFRVINRWEPTSQKCSHCGFRGGKKELNVREWNCLKCGTHHDRDVNAAV
HHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH
NILEVVQLRTKVEVIETKVLENPVQLSLFNIVADGQSETEQKRALSKGKTCRKKPANCDE
HHHHHHHHHHHHHHHHHHHHCCCHHEEEEHEEECCCCHHHHHHHHHCCCCCCCCCCCHHH
MLTRFESFKQLNLFD
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]