| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475131
Identifier: 113475131
GI number: 113475131
Start: 2155551
End: 2157032
Strand: Reverse
Name: 113475131
Synonym: Tery_1423
Alternate gene names: NA
Gene position: 2157032-2155551 (Counterclockwise)
Preceding gene: 113475132
Following gene: 113475129
Centisome position: 27.83
GC content: 32.05
Gene sequence:
>1482_bases ATGCCAAACACCCGTATATTCTCAGATATATCACAGGACGATTTGATTAAAATAGAGAGATTATTGGAAAATATTTTGAT AAATATTGATGGTATAGCAGGAAGAAAAGCTATTTTGAAAAATGCTGGATTTGCTCAATATTTTATCGCTGGTCTTGATT TTAACTTAAATATTTATGAATTTATTACTATTTTAGTCTCCAAATTTAAAGACTATCGAGTTTCTAGTCAAAGATTAGAT TATCATCCTTTAATAGCTTTGTTAGATTATCTTTTGAAGCAACCAGAAAGATATAACTTAGAGAATACAGATATAAAGTT TGCTCGGAAAATTATTAATATCGGTAAAATCAAAATCCAAGAATTAAAAGCAGAATTCAAAACCCAAGAATTAAAACCAG AATTCAAAATAGAAATACCTCATGAAACACCTACTATTGATATTCTAATTATTACAGCCCTAAAAGATGAATTAAACGCT CTGAAAAACTGTGATAATCAATCTGGAAAGAGTTGGCAAGAATTGAAAGACAGTTCCAATTATTCCTACTACAAAACTAC TTTCAACCATAAAAACGGTACTCAATTAAATATAGTAGCGGCTCGTCCTGTAGAAATGGGAGAAAACTACACTAATAATC TAGCCACTCGACTTATTTCAGAATTAAAACCTCGTTGTTTAGCAATGACCGGAGTTTGTGCAGGGAATAAAAAAGAGACT TTTTTAGGTGATGTAATTGTTGCAAATCGAGTCTTTAAATTTGACTATGGTAAACTTGTTACTCATTACGAATCAATAGG TAATAAACAAATTCGTACTGAAGAAATCTTCCATGATATTCGCACTTATAACTTGAAACGCCAATGGGAATTTATGATTC AAGAATTTCCCCAAGATTGGCTAAATACTATTCAAATTCCTAGACCAAAATCTGACTATCATCAAGAACGTTGGTTACTC CACAAACTCTATGATTTTCAACAACAACCAGACAAATATTTACGTCCTGACCAGCACCCAGAAAGGCCAACAGAATGCCC AGATTGGAGAAAAGTAATTCAACAATTAAAAGAAAAAGAATTATTAAAAATAGACTCCTTGGAATTAACTGAAAAAGCTC AGAAAGAAATTAAGAATGACCGAATAGAATATTTAGAATACCAACATTACAAAGACCCCTTAAATTCTCAAATTCATACA GGGGTAATTGCTACTACAAGTAAAGTACAAAAAGACCCCCAACTTTTCCAACGTATCGAAAAATTACAACGGAAAATATT AGGAGTAGAAATGGAAGGTGCAGCTATTGGTGCAGTAGCAGAAATTGAGGAAATTCCCATCATTATTGTTAAGGGAGTTC AAGATTATGCTGATGATGATAAAAGTGACCAATTTCGTCAATATGCAGCGGAAGTTTCCGCCCGCTTTTTATTAGCTTTT TTGACTACAATAGAATTAGCAATATTTCGGAAAAAAGGTTGA
Upstream 100 bases:
>100_bases ATTGAAACGACTTTAACACCTTAATATACTTCTTAGGTCAACAATTTATTTTGTAGATAGCTGCTAAAATTTAAAACATC AATAATGGAAGAAAAGTCAA
Downstream 100 bases:
>100_bases GAGAACTCATTGAAACTACTTTGAAACTTACTTTATCTAAAATGTCAATAGTTCAATGGTTGAATTAATACTCAACTAAA ATGAAATTAGGCGATCGCTA
Product: nucleoside phosphorylase-like protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Family; WD Repeat-Containing Protein
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MPNTRIFSDISQDDLIKIERLLENILINIDGIAGRKAILKNAGFAQYFIAGLDFNLNIYEFITILVSKFKDYRVSSQRLD YHPLIALLDYLLKQPERYNLENTDIKFARKIINIGKIKIQELKAEFKTQELKPEFKIEIPHETPTIDILIITALKDELNA LKNCDNQSGKSWQELKDSSNYSYYKTTFNHKNGTQLNIVAARPVEMGENYTNNLATRLISELKPRCLAMTGVCAGNKKET FLGDVIVANRVFKFDYGKLVTHYESIGNKQIRTEEIFHDIRTYNLKRQWEFMIQEFPQDWLNTIQIPRPKSDYHQERWLL HKLYDFQQQPDKYLRPDQHPERPTECPDWRKVIQQLKEKELLKIDSLELTEKAQKEIKNDRIEYLEYQHYKDPLNSQIHT GVIATTSKVQKDPQLFQRIEKLQRKILGVEMEGAAIGAVAEIEEIPIIIVKGVQDYADDDKSDQFRQYAAEVSARFLLAF LTTIELAIFRKKG
Sequences:
>Translated_493_residues MPNTRIFSDISQDDLIKIERLLENILINIDGIAGRKAILKNAGFAQYFIAGLDFNLNIYEFITILVSKFKDYRVSSQRLD YHPLIALLDYLLKQPERYNLENTDIKFARKIINIGKIKIQELKAEFKTQELKPEFKIEIPHETPTIDILIITALKDELNA LKNCDNQSGKSWQELKDSSNYSYYKTTFNHKNGTQLNIVAARPVEMGENYTNNLATRLISELKPRCLAMTGVCAGNKKET FLGDVIVANRVFKFDYGKLVTHYESIGNKQIRTEEIFHDIRTYNLKRQWEFMIQEFPQDWLNTIQIPRPKSDYHQERWLL HKLYDFQQQPDKYLRPDQHPERPTECPDWRKVIQQLKEKELLKIDSLELTEKAQKEIKNDRIEYLEYQHYKDPLNSQIHT GVIATTSKVQKDPQLFQRIEKLQRKILGVEMEGAAIGAVAEIEEIPIIIVKGVQDYADDDKSDQFRQYAAEVSARFLLAF LTTIELAIFRKKG >Mature_492_residues PNTRIFSDISQDDLIKIERLLENILINIDGIAGRKAILKNAGFAQYFIAGLDFNLNIYEFITILVSKFKDYRVSSQRLDY HPLIALLDYLLKQPERYNLENTDIKFARKIINIGKIKIQELKAEFKTQELKPEFKIEIPHETPTIDILIITALKDELNAL KNCDNQSGKSWQELKDSSNYSYYKTTFNHKNGTQLNIVAARPVEMGENYTNNLATRLISELKPRCLAMTGVCAGNKKETF LGDVIVANRVFKFDYGKLVTHYESIGNKQIRTEEIFHDIRTYNLKRQWEFMIQEFPQDWLNTIQIPRPKSDYHQERWLLH KLYDFQQQPDKYLRPDQHPERPTECPDWRKVIQQLKEKELLKIDSLELTEKAQKEIKNDRIEYLEYQHYKDPLNSQIHTG VIATTSKVQKDPQLFQRIEKLQRKILGVEMEGAAIGAVAEIEEIPIIIVKGVQDYADDDKSDQFRQYAAEVSARFLLAFL TTIELAIFRKKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57655; Mature: 57524
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTRIFSDISQDDLIKIERLLENILINIDGIAGRKAILKNAGFAQYFIAGLDFNLNIYE CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHH FITILVSKFKDYRVSSQRLDYHPLIALLDYLLKQPERYNLENTDIKFARKIINIGKIKIQ HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH ELKAEFKTQELKPEFKIEIPHETPTIDILIITALKDELNALKNCDNQSGKSWQELKDSSN HHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHCCCC YSYYKTTFNHKNGTQLNIVAARPVEMGENYTNNLATRLISELKPRCLAMTGVCAGNKKET CCEEEEEECCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHCCHHEEHCCCCCCCCCHH FLGDVIVANRVFKFDYGKLVTHYESIGNKQIRTEEIFHDIRTYNLKRQWEFMIQEFPQDW HHHHHHHHHHHHEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHH LNTIQIPRPKSDYHQERWLLHKLYDFQQQPDKYLRPDQHPERPTECPDWRKVIQQLKEKE HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LLKIDSLELTEKAQKEIKNDRIEYLEYQHYKDPLNSQIHTGVIATTSKVQKDPQLFQRIE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCEEEEHHHHHCCHHHHHHHH KLQRKILGVEMEGAAIGAVAEIEEIPIIIVKGVQDYADDDKSDQFRQYAAEVSARFLLAF HHHHHHCCEEECCCHHHHHHHHHHCCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH LTTIELAIFRKKG HHHHHHHHHCCCC >Mature Secondary Structure PNTRIFSDISQDDLIKIERLLENILINIDGIAGRKAILKNAGFAQYFIAGLDFNLNIYE CCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHH FITILVSKFKDYRVSSQRLDYHPLIALLDYLLKQPERYNLENTDIKFARKIINIGKIKIQ HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHH ELKAEFKTQELKPEFKIEIPHETPTIDILIITALKDELNALKNCDNQSGKSWQELKDSSN HHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHHHHCCCC YSYYKTTFNHKNGTQLNIVAARPVEMGENYTNNLATRLISELKPRCLAMTGVCAGNKKET CCEEEEEECCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHCCHHEEHCCCCCCCCCHH FLGDVIVANRVFKFDYGKLVTHYESIGNKQIRTEEIFHDIRTYNLKRQWEFMIQEFPQDW HHHHHHHHHHHHEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHH LNTIQIPRPKSDYHQERWLLHKLYDFQQQPDKYLRPDQHPERPTECPDWRKVIQQLKEKE HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LLKIDSLELTEKAQKEIKNDRIEYLEYQHYKDPLNSQIHTGVIATTSKVQKDPQLFQRIE HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCEEEEHHHHHCCHHHHHHHH KLQRKILGVEMEGAAIGAVAEIEEIPIIIVKGVQDYADDDKSDQFRQYAAEVSARFLLAF HHHHHHCCEEECCCHHHHHHHHHHCCEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH LTTIELAIFRKKG HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA