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The map label for this gene is rfbA [H]

Identifier: 113475087

GI number: 113475087

Start: 2091665

End: 2092519

Strand: Reverse

Name: rfbA [H]

Synonym: Tery_1363

Alternate gene names: 113475087

Gene position: 2092519-2091665 (Counterclockwise)

Preceding gene: 113475088

Following gene: 113475086

Centisome position: 27.0

GC content: 33.45

Gene sequence:

>855_bases
ATGATGAAAAGTATTATCCGCAAAACCAGCAGAGTTAGTAATTGGCTAACCGTGGTAAATACTGATTGGTTAGTTAATTT
AAACTTATTATTCACATTAGTACGAAGGGATTTAGAGGCCAGGTATAAAGGCTCAATTCTTGGAAATTTATGGCCACTAC
TCAATCAGCTATCCCAACTTTTAATTTATACCTACGTCTTCTCAATTATTCTTAAAGTTAAACTGAGCCTCAGAGGATTA
CCAGAAGATAGTAAGCTAACCTTTGGACTATGGCTATTTGCAGGATTAATAGCTTGGCTAGCTTTCACTAATGGATTAAC
TCAAGCTTCTGGATGTGTAATTAGACAGCCCAATTTAGTTAAAAAATTAGTCTTTCCACTCAGTTTATTACCCTTAGTTC
CTATTCTTTCAACATTTCTAGAAAGTACATTTGGGTTAATAGCTTTAATAGGAATGCTTTATATATCATCTGGGGTAATA
AATCAAACATTATGGCTACTACCTATAGTATTTATACCTCAACTTTTATTAACAGCAGGTTTAGGATATTTTACTGCCGG
ATTAACAGTATTTTTACGGGATATTCCACAGACTTTAGGAGTAATTATTAATCTTTGGTTTTATGTTACACCAATAGTAT
ATCCTGCATCAGTAATTCCAGAAAATTGGAGAGTTTGGGTATTTTGGTGTAATCCTTTAACAGCGATAGTCGAAGTATAT
CGTGACCTAATATTAGTAGGAGAAATTCAACACTGGGGAGAATTAGGAATTGCTACTTTAATGTCTACACTAATATTTTA
TTTTGGCTTGTGGGTTTATCAAAAATTACGTCCTGCTTTTGCCGATGTTTTATGA

Upstream 100 bases:

>100_bases
GCGTAATTAATTTTCTCCGGCTTCCGGCTTGTTCTCATTCGTAAGTAGTTTATACTAAATCCGGTTTACATGAGGTGGGT
TTTCCACTTACCAAAAATTT

Downstream 100 bases:

>100_bases
AAGTATTCATTCCCTAACTATTAGCTTAATATTCACCCCCTTTAAAAGCGAGGTTTAAATGAAAAATATAATTTTTCATG
CTTAAAAGAGAATACTTTGA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MMKSIIRKTSRVSNWLTVVNTDWLVNLNLLFTLVRRDLEARYKGSILGNLWPLLNQLSQLLIYTYVFSIILKVKLSLRGL
PEDSKLTFGLWLFAGLIAWLAFTNGLTQASGCVIRQPNLVKKLVFPLSLLPLVPILSTFLESTFGLIALIGMLYISSGVI
NQTLWLLPIVFIPQLLLTAGLGYFTAGLTVFLRDIPQTLGVIINLWFYVTPIVYPASVIPENWRVWVFWCNPLTAIVEVY
RDLILVGEIQHWGELGIATLMSTLIFYFGLWVYQKLRPAFADVL

Sequences:

>Translated_284_residues
MMKSIIRKTSRVSNWLTVVNTDWLVNLNLLFTLVRRDLEARYKGSILGNLWPLLNQLSQLLIYTYVFSIILKVKLSLRGL
PEDSKLTFGLWLFAGLIAWLAFTNGLTQASGCVIRQPNLVKKLVFPLSLLPLVPILSTFLESTFGLIALIGMLYISSGVI
NQTLWLLPIVFIPQLLLTAGLGYFTAGLTVFLRDIPQTLGVIINLWFYVTPIVYPASVIPENWRVWVFWCNPLTAIVEVY
RDLILVGEIQHWGELGIATLMSTLIFYFGLWVYQKLRPAFADVL
>Mature_284_residues
MMKSIIRKTSRVSNWLTVVNTDWLVNLNLLFTLVRRDLEARYKGSILGNLWPLLNQLSQLLIYTYVFSIILKVKLSLRGL
PEDSKLTFGLWLFAGLIAWLAFTNGLTQASGCVIRQPNLVKKLVFPLSLLPLVPILSTFLESTFGLIALIGMLYISSGVI
NQTLWLLPIVFIPQLLLTAGLGYFTAGLTVFLRDIPQTLGVIINLWFYVTPIVYPASVIPENWRVWVFWCNPLTAIVEVY
RDLILVGEIQHWGELGIATLMSTLIFYFGLWVYQKLRPAFADVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32252; Mature: 32252

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]