Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475063

Identifier: 113475063

GI number: 113475063

Start: 2031392

End: 2031607

Strand: Reverse

Name: 113475063

Synonym: Tery_1335

Alternate gene names: NA

Gene position: 2031607-2031392 (Counterclockwise)

Preceding gene: 113475064

Following gene: 113475061

Centisome position: 26.21

GC content: 30.56

Gene sequence:

>216_bases
GTGGCTCCGGAAAAAATGTCTATAAGAAAGCTGGCTTATAGGTTTGGAGTGAGCCAAAATTTTATTCAAACCTTAAGCAA
AAAATATCAAGAAACTGAAAATATTAAACCTTTACCTCAAGAAGAAAGTTATCCTTCTAAGCTCAATGGTGAAGAATTAG
TTATCTTAGTAGAAATAAGGGATAAAAATAATGATTCAACTAATGAGAAGTTATAG

Upstream 100 bases:

>100_bases
TCATGGTCGTAAGGTACACTAGGAGGGCTAATTTTTATAGCGATCGCGAAACTGATGAAACTTTATTCTATAGACTTTAT
AAAAAAAATTGTAGAAATTT

Downstream 100 bases:

>100_bases
GAGTTTTACTTTTTATAAAGCCTTAAGGAACAACTGCTATCCTATTAATGAAGCTATAAGTCCTGGTTAATATTCAGTAT
AATTTGCTTAAATATTTCCT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MAPEKMSIRKLAYRFGVSQNFIQTLSKKYQETENIKPLPQEESYPSKLNGEELVILVEIRDKNNDSTNEKL

Sequences:

>Translated_71_residues
MAPEKMSIRKLAYRFGVSQNFIQTLSKKYQETENIKPLPQEESYPSKLNGEELVILVEIRDKNNDSTNEKL
>Mature_70_residues
APEKMSIRKLAYRFGVSQNFIQTLSKKYQETENIKPLPQEESYPSKLNGEELVILVEIRDKNNDSTNEKL

Specific function: Unknown

COG id: COG3415

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8274; Mature: 8142

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEKMSIRKLAYRFGVSQNFIQTLSKKYQETENIKPLPQEESYPSKLNGEELVILVEIR
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE
DKNNDSTNEKL
CCCCCCCCCCC
>Mature Secondary Structure 
APEKMSIRKLAYRFGVSQNFIQTLSKKYQETENIKPLPQEESYPSKLNGEELVILVEIR
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE
DKNNDSTNEKL
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA