Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475052

Identifier: 113475052

GI number: 113475052

Start: 2008631

End: 2009329

Strand: Reverse

Name: 113475052

Synonym: Tery_1316

Alternate gene names: NA

Gene position: 2009329-2008631 (Counterclockwise)

Preceding gene: 113475053

Following gene: 113475049

Centisome position: 25.93

GC content: 37.91

Gene sequence:

>699_bases
ATGAAAAAACAAAATCAAACTCTAAATTTATCTGTTAGTATTGTGGCCAGTGTCTGTGCATTAGCAGTGGTGGTGGGTGG
TGGTATTGCGTTGTGGACAAATTTACAATTGACCACCAAAAAAACTTCTAATAATCCCCAGACTCTTACAGACCTCCCTA
CTCAAGAGTCACCATTACAGACTTTACCTTCTGTTCCTTCTGATACAATTAAATCTCCAAACTCCCAAAAGTTTCCTTTG
TCTATAAAATCAGAACCATTAGCAGTTACAGAAAAGACTGTGGAAGTCTACTGGGTTAAGGATACTGCTACAGGTATTAG
CTTAGCGTCTTCTCCGGTAAAAATTAAAGAAATAGATGAACCGGAAGCTATTTTAAGAGCTGCTTTTGACCTTTTATTAT
CTCGCCCAGAAAATACCTATGTTGTAAGTGCAATACCCGAAGGAACCAAAGTTCAAGCCTTAACTGTTGAAAACAACGGT
GTTTACATTGACTTATCTGAGGAATTTACTTATGGAGGTGGTAGTGCTTCAATGATAGGGCGTTTGGGACAAGTTATTTA
TACTGCCTCTAGTTTAGAGCCAGATGTTAAAGTTTGGATTTTTGTGGAGGGCAAACCTTTAGAAATGTTAGGGAGTGAAG
GATTAGAAGTATCTCAACCTATTACTCGGCAGAACTTTCAACAAGAGTTTCAATTTTAG

Upstream 100 bases:

>100_bases
ATTTATAAATCAGCTTTAATATAGTTAATATAGTTAACCTAAGAGAAACTGAAAACTCAGCTCCTCACTGCCATTATGTT
AATCCTCAAGGATCGTCAAA

Downstream 100 bases:

>100_bases
ATATATTACTACATCTTTTGGTGAAGACAATAAATTTAGCTTATAAGGTAACAGGAAATAGAGAATAGAAAACGGATGAA
TGTCCTAAGATGTTTACATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKQNQTLNLSVSIVASVCALAVVVGGGIALWTNLQLTTKKTSNNPQTLTDLPTQESPLQTLPSVPSDTIKSPNSQKFPL
SIKSEPLAVTEKTVEVYWVKDTATGISLASSPVKIKEIDEPEAILRAAFDLLLSRPENTYVVSAIPEGTKVQALTVENNG
VYIDLSEEFTYGGGSASMIGRLGQVIYTASSLEPDVKVWIFVEGKPLEMLGSEGLEVSQPITRQNFQQEFQF

Sequences:

>Translated_232_residues
MKKQNQTLNLSVSIVASVCALAVVVGGGIALWTNLQLTTKKTSNNPQTLTDLPTQESPLQTLPSVPSDTIKSPNSQKFPL
SIKSEPLAVTEKTVEVYWVKDTATGISLASSPVKIKEIDEPEAILRAAFDLLLSRPENTYVVSAIPEGTKVQALTVENNG
VYIDLSEEFTYGGGSASMIGRLGQVIYTASSLEPDVKVWIFVEGKPLEMLGSEGLEVSQPITRQNFQQEFQF
>Mature_232_residues
MKKQNQTLNLSVSIVASVCALAVVVGGGIALWTNLQLTTKKTSNNPQTLTDLPTQESPLQTLPSVPSDTIKSPNSQKFPL
SIKSEPLAVTEKTVEVYWVKDTATGISLASSPVKIKEIDEPEAILRAAFDLLLSRPENTYVVSAIPEGTKVQALTVENNG
VYIDLSEEFTYGGGSASMIGRLGQVIYTASSLEPDVKVWIFVEGKPLEMLGSEGLEVSQPITRQNFQQEFQF

Specific function: Unknown

COG id: COG5401

COG function: function code R; Spore germination protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25160; Mature: 25160

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQNQTLNLSVSIVASVCALAVVVGGGIALWTNLQLTTKKTSNNPQTLTDLPTQESPLQ
CCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCEEECCCCCCCCHH
TLPSVPSDTIKSPNSQKFPLSIKSEPLAVTEKTVEVYWVKDTATGISLASSPVKIKEIDE
HCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCCEECCCCEEEEECCC
PEAILRAAFDLLLSRPENTYVVSAIPEGTKVQALTVENNGVYIDLSEEFTYGGGSASMIG
HHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCEEEEECCCEECCCCCHHHHH
RLGQVIYTASSLEPDVKVWIFVEGKPLEMLGSEGLEVSQPITRQNFQQEFQF
HHHHHEEECCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKQNQTLNLSVSIVASVCALAVVVGGGIALWTNLQLTTKKTSNNPQTLTDLPTQESPLQ
CCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCEEECCCCCCCCHH
TLPSVPSDTIKSPNSQKFPLSIKSEPLAVTEKTVEVYWVKDTATGISLASSPVKIKEIDE
HCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCCEECCCCEEEEECCC
PEAILRAAFDLLLSRPENTYVVSAIPEGTKVQALTVENNGVYIDLSEEFTYGGGSASMIG
HHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCEEEEECCCEECCCCCHHHHH
RLGQVIYTASSLEPDVKVWIFVEGKPLEMLGSEGLEVSQPITRQNFQQEFQF
HHHHHEEECCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA