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The map label for this gene is 113475049

Identifier: 113475049

GI number: 113475049

Start: 2002256

End: 2003392

Strand: Reverse

Name: 113475049

Synonym: Tery_1312

Alternate gene names: NA

Gene position: 2003392-2002256 (Counterclockwise)

Preceding gene: 113475052

Following gene: 113475048

Centisome position: 25.85

GC content: 39.84

Gene sequence:

>1137_bases
ATGGTAAATTTGCGCAATTTCGTAATGAACACTTGTAAACGTCTGCTTAAAACTGCTATCCTAGGGCTGTTACTTATTAC
TCTGTCTATTGGTATTAGTGCTGCTTGGTGGAACGGTGGTATGACAACAACTCGTCAAAGTCGTTTGCCCCAGGGAGACC
CTATTACTGATGGTAGGGCCTTGTTAAGGTATGCTCTACCAATAGAAAATGAACCTGTGCGTAAAATACAAAGTAGTCTA
GAAGATATTTCTAACAGATTACGAGGTAAACGTTGGACTTCTGTTGTTAGTGATATTGGGACTGCATCAAGAGTTCTCAG
TATCAATAAACCTAAATTGCTAGCTAGTGTTCCTGAATCAAAACAACCTGAGGCAGAGGAAATAATTGCTATACTCGATC
AAGGTATTATTGATATTAAAGAGGTTGCTGAAGCTAAAGATGGGGAACAGGTATTAGAGCAACGGGCAAAACTACTGACA
TTAGTAGGTCAGCTTGAACAGTTAATGGTAGTAGGTTTTCCGTTTGAAGTGCCTTCAGATTTTTCTAATTTACCGCAACT
CAAAGGTCGCGCTACTATTGACATGGAAACTAATAAAGGTTCCTTGACTTTAGTTGTTGATGGTTATAGTGCCCCTGTTA
CAGCAGGTAATTTTGTAGATTTGGTTCAGAGGGGTTTTTATGATGGCCTAGAGTTTATTCGATCAGAACAGTCTTATGTC
TTGCAAGCTGGAGATCCTCCAGGCCCAGAAGTTGGTTTTATTGACCCAGATAGTGGGAAGTACCGTAATATCCCATTAGA
AATTTTAGTCCAGGGAGACAACGAACCGATATATAGTTTTACTTTAGAAGAGATTGGCCGTTTTCGCGAACTTCCTGTTC
TGCCTTTTTCTGCTTATGGTGCAGTAGCAATGGCTCGGCCTGAAGCTGAAAATGATGGTGCTTCTTCTCAATTTTTCTTT
TTCCTATTCCAACCAGAATTAACCCCTGCCGGAGTAAATTTATTGGATGGTCGTTATACGGTTTTTGGTTATGTTGTTGC
AGGAAAAAAGGTTTTGGAAGAATTAAACAAGGGAGACAAAATTATTTCTGCGAAGGTAGTAGCTGGGTTTGAAAATATTG
TGGAACCTGAAGCCTAA

Upstream 100 bases:

>100_bases
CAGAGAAAGATAACTTCTGACTTCTGAATACTGACTTATGACTTCGTTAAGACTGTGGACAGACATGTAATATAAGCTAA
GAGAATAAAATTTCACAAAT

Downstream 100 bases:

>100_bases
TTTCTGGGTTGGGAAATTTGGTATTAAATTAGGGTAATTGGATGATTTAGCCTATCAATTTCTATATAAATTTCTAGAAG
TTATGTCAAAAAAACTGACT

Product: cyclophilin type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MVNLRNFVMNTCKRLLKTAILGLLLITLSIGISAAWWNGGMTTTRQSRLPQGDPITDGRALLRYALPIENEPVRKIQSSL
EDISNRLRGKRWTSVVSDIGTASRVLSINKPKLLASVPESKQPEAEEIIAILDQGIIDIKEVAEAKDGEQVLEQRAKLLT
LVGQLEQLMVVGFPFEVPSDFSNLPQLKGRATIDMETNKGSLTLVVDGYSAPVTAGNFVDLVQRGFYDGLEFIRSEQSYV
LQAGDPPGPEVGFIDPDSGKYRNIPLEILVQGDNEPIYSFTLEEIGRFRELPVLPFSAYGAVAMARPEAENDGASSQFFF
FLFQPELTPAGVNLLDGRYTVFGYVVAGKKVLEELNKGDKIISAKVVAGFENIVEPEA

Sequences:

>Translated_378_residues
MVNLRNFVMNTCKRLLKTAILGLLLITLSIGISAAWWNGGMTTTRQSRLPQGDPITDGRALLRYALPIENEPVRKIQSSL
EDISNRLRGKRWTSVVSDIGTASRVLSINKPKLLASVPESKQPEAEEIIAILDQGIIDIKEVAEAKDGEQVLEQRAKLLT
LVGQLEQLMVVGFPFEVPSDFSNLPQLKGRATIDMETNKGSLTLVVDGYSAPVTAGNFVDLVQRGFYDGLEFIRSEQSYV
LQAGDPPGPEVGFIDPDSGKYRNIPLEILVQGDNEPIYSFTLEEIGRFRELPVLPFSAYGAVAMARPEAENDGASSQFFF
FLFQPELTPAGVNLLDGRYTVFGYVVAGKKVLEELNKGDKIISAKVVAGFENIVEPEA
>Mature_378_residues
MVNLRNFVMNTCKRLLKTAILGLLLITLSIGISAAWWNGGMTTTRQSRLPQGDPITDGRALLRYALPIENEPVRKIQSSL
EDISNRLRGKRWTSVVSDIGTASRVLSINKPKLLASVPESKQPEAEEIIAILDQGIIDIKEVAEAKDGEQVLEQRAKLLT
LVGQLEQLMVVGFPFEVPSDFSNLPQLKGRATIDMETNKGSLTLVVDGYSAPVTAGNFVDLVQRGFYDGLEFIRSEQSYV
LQAGDPPGPEVGFIDPDSGKYRNIPLEILVQGDNEPIYSFTLEEIGRFRELPVLPFSAYGAVAMARPEAENDGASSQFFF
FLFQPELTPAGVNLLDGRYTVFGYVVAGKKVLEELNKGDKIISAKVVAGFENIVEPEA

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cellular thylakoid lumen (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130
- InterPro:   IPR023222 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 41507; Mature: 41507

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5 ; PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLRNFVMNTCKRLLKTAILGLLLITLSIGISAAWWNGGMTTTRQSRLPQGDPITDGRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHCCCCCCCCCCHHH
LLRYALPIENEPVRKIQSSLEDISNRLRGKRWTSVVSDIGTASRVLSINKPKLLASVPES
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHEEECCCCHHEEECCCC
KQPEAEEIIAILDQGIIDIKEVAEAKDGEQVLEQRAKLLTLVGQLEQLMVVGFPFEVPSD
CCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
FSNLPQLKGRATIDMETNKGSLTLVVDGYSAPVTAGNFVDLVQRGFYDGLEFIRSEQSYV
HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
LQAGDPPGPEVGFIDPDSGKYRNIPLEILVQGDNEPIYSFTLEEIGRFRELPVLPFSAYG
EECCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCCCC
AVAMARPEAENDGASSQFFFFLFQPELTPAGVNLLDGRYTVFGYVVAGKKVLEELNKGDK
CEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEEEEHHHHHHHHHHCCCCC
IISAKVVAGFENIVEPEA
EEEHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVNLRNFVMNTCKRLLKTAILGLLLITLSIGISAAWWNGGMTTTRQSRLPQGDPITDGRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHCCCCCCCCCCHHH
LLRYALPIENEPVRKIQSSLEDISNRLRGKRWTSVVSDIGTASRVLSINKPKLLASVPES
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHEEECCCCHHEEECCCC
KQPEAEEIIAILDQGIIDIKEVAEAKDGEQVLEQRAKLLTLVGQLEQLMVVGFPFEVPSD
CCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
FSNLPQLKGRATIDMETNKGSLTLVVDGYSAPVTAGNFVDLVQRGFYDGLEFIRSEQSYV
HHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
LQAGDPPGPEVGFIDPDSGKYRNIPLEILVQGDNEPIYSFTLEEIGRFRELPVLPFSAYG
EECCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCCCC
AVAMARPEAENDGASSQFFFFLFQPELTPAGVNLLDGRYTVFGYVVAGKKVLEELNKGDK
CEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCEEEEEEEHHHHHHHHHHCCCCC
IISAKVVAGFENIVEPEA
EEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]