| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475037
Identifier: 113475037
GI number: 113475037
Start: 1975139
End: 1976026
Strand: Direct
Name: 113475037
Synonym: Tery_1294
Alternate gene names: NA
Gene position: 1975139-1976026 (Clockwise)
Preceding gene: 113475036
Following gene: 113475040
Centisome position: 25.49
GC content: 32.77
Gene sequence:
>888_bases ATGGTGAATTTAACAGCAATCAAAAACCTAAAAAAAAGTTTCTCTTTTGTACCTTTAAGGCAACGTTTTAATCGAAGAAA AAAAATATCTTTTGAAGAAAAACAAAGTCAGGCATTAAAAGATATCGGGGATAAATTAAAAATGTTTAGAAATAAACATT CTATTTGTTTAAAAAGAGTGGCAGTAGTGACAATGATTAGAATTAATTTACTAGAAGCAATAGAAGAAGGTAATTTAAAA GAACTGCCAGAGCCAGTTTATATTCAAGGTATGATTAAGCGATATGCAGATGCTATAGGATTAGATGGAGAGGAACTAGC AAACTCATTTCCAACTGCAAAAGTTCAGGAAATTACGATAAAATCTCTGCCGAATTTATCAATGCTTCAGCTACGACCAT ATCATCTTTACTTTTTATATGTATTACTTGTTATTTTAGCAGTTCGTTTGTTACCTTATGTTAATAACTCTTATTATATA TGGATACGAGATGGTATTACTAAGTCTGAAAAACAACAATATGAACGAGAAAATGAGGTTAATGTTTTACCTCCAGTTTC TCAGAAAAATAGGAAAACTGAGGGAAGATCTTCAGATCAAACAACACAAAAGTCAGATAAACAAAATGATGGACAACCTG TAGTTCTCAGTGTAATTGCGAAAGAAGAATCTTGGGTATCAATAAAGATAGATGGAAAAGTAGCGTTTGAAGGGACTTTA GCTCAAGGCACTCAGAAAACTTGGTCAGCCCAAAAGCAACTGGTTTTTTTCGCAGGCAATGCTGGAGGAATAATTATACC TATTGATAATGGGCAAAATATGCAACTGGGAAAACCGGGTGAAGTCAAAGAAGTTGTTCTTACTTCTACTAACACCCAAA TACAATAA
Upstream 100 bases:
>100_bases CCTGAATCATAACTCCTAGTAATTTGTAGCCAACTTTTTTCCAAATGGGATAACTATCCAAACTAAACAAGTTATAGTTT ATATAAATTAAGTTAAAGCA
Downstream 100 bases:
>100_bases ATAGTATAGCTTTAAGCTATCAGCTTAAGTTAAAGCTATCTATTGGTTGTAAAAGATTTTAATTTCATTAATGTCTCAAT ACTTTTTTGTAGTGCTATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MVNLTAIKNLKKSFSFVPLRQRFNRRKKISFEEKQSQALKDIGDKLKMFRNKHSICLKRVAVVTMIRINLLEAIEEGNLK ELPEPVYIQGMIKRYADAIGLDGEELANSFPTAKVQEITIKSLPNLSMLQLRPYHLYFLYVLLVILAVRLLPYVNNSYYI WIRDGITKSEKQQYERENEVNVLPPVSQKNRKTEGRSSDQTTQKSDKQNDGQPVVLSVIAKEESWVSIKIDGKVAFEGTL AQGTQKTWSAQKQLVFFAGNAGGIIIPIDNGQNMQLGKPGEVKEVVLTSTNTQIQ
Sequences:
>Translated_295_residues MVNLTAIKNLKKSFSFVPLRQRFNRRKKISFEEKQSQALKDIGDKLKMFRNKHSICLKRVAVVTMIRINLLEAIEEGNLK ELPEPVYIQGMIKRYADAIGLDGEELANSFPTAKVQEITIKSLPNLSMLQLRPYHLYFLYVLLVILAVRLLPYVNNSYYI WIRDGITKSEKQQYERENEVNVLPPVSQKNRKTEGRSSDQTTQKSDKQNDGQPVVLSVIAKEESWVSIKIDGKVAFEGTL AQGTQKTWSAQKQLVFFAGNAGGIIIPIDNGQNMQLGKPGEVKEVVLTSTNTQIQ >Mature_295_residues MVNLTAIKNLKKSFSFVPLRQRFNRRKKISFEEKQSQALKDIGDKLKMFRNKHSICLKRVAVVTMIRINLLEAIEEGNLK ELPEPVYIQGMIKRYADAIGLDGEELANSFPTAKVQEITIKSLPNLSMLQLRPYHLYFLYVLLVILAVRLLPYVNNSYYI WIRDGITKSEKQQYERENEVNVLPPVSQKNRKTEGRSSDQTTQKSDKQNDGQPVVLSVIAKEESWVSIKIDGKVAFEGTL AQGTQKTWSAQKQLVFFAGNAGGIIIPIDNGQNMQLGKPGEVKEVVLTSTNTQIQ
Specific function: Unknown
COG id: COG1426
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33484; Mature: 33484
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNLTAIKNLKKSFSFVPLRQRFNRRKKISFEEKQSQALKDIGDKLKMFRNKHSICLKRV CCCHHHHHHHHHHCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVTMIRINLLEAIEEGNLKELPEPVYIQGMIKRYADAIGLDGEELANSFPTAKVQEITI HHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEHH KSLPNLSMLQLRPYHLYFLYVLLVILAVRLLPYVNNSYYIWIRDGITKSEKQQYERENEV HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCC NVLPPVSQKNRKTEGRSSDQTTQKSDKQNDGQPVVLSVIAKEESWVSIKIDGKVAFEGTL EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEECCC AQGTQKTWSAQKQLVFFAGNAGGIIIPIDNGQNMQLGKPGEVKEVVLTSTNTQIQ CCCCHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure MVNLTAIKNLKKSFSFVPLRQRFNRRKKISFEEKQSQALKDIGDKLKMFRNKHSICLKRV CCCHHHHHHHHHHCCCCHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVTMIRINLLEAIEEGNLKELPEPVYIQGMIKRYADAIGLDGEELANSFPTAKVQEITI HHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEHH KSLPNLSMLQLRPYHLYFLYVLLVILAVRLLPYVNNSYYIWIRDGITKSEKQQYERENEV HCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCC NVLPPVSQKNRKTEGRSSDQTTQKSDKQNDGQPVVLSVIAKEESWVSIKIDGKVAFEGTL EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEECCC AQGTQKTWSAQKQLVFFAGNAGGIIIPIDNGQNMQLGKPGEVKEVVLTSTNTQIQ CCCCHHHHCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA