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The map label for this gene is yjbC [C]

Identifier: 113475036

GI number: 113475036

Start: 1973698

End: 1974462

Strand: Direct

Name: yjbC [C]

Synonym: Tery_1293

Alternate gene names: 113475036

Gene position: 1973698-1974462 (Clockwise)

Preceding gene: 113475034

Following gene: 113475037

Centisome position: 25.47

GC content: 37.52

Gene sequence:

>765_bases
ATGGATGAAAGATTACAAAAAATATTATCTCAGTGGGGCATAGCATCTCGGCGTCAAGCTGAACAAATGATCATAGCGGG
ACGAGTAAAGGTTAATGGTAAAATTGTCCAATTAGGAGAAAAGGCTCAACCAGACTTGGACAATATTGAAGTGGATGGTT
TGCCCATTAGACCCGAAGCTCGACCATCACCCATATATTTATTGTTAAATAAACCTATGGGAGTAATTTCAACTTGTTCG
GAACCTAGGAAACGTAGTAAAGTTTTAGATATCCTAAACGCAGAACTACGAAATGGAAAAGGTATTCATCCTGTAGGACG
TTTAGATGCAGACTCTACAGGAGCATTACTCCTCACAAATGATGGTCGGGTGACTTATTGTTTAACCCACCCCAAATATT
GTCTTTCTAAAACCTATCAAGTTTTGGTAGAAGGTCATCCCCAAGAATCAATCTTAAAGTTGTGGCGTCAAGGTATTATT
TTATCTGGTAAAAAAACTTTACCCGCTGAGGTTAAAGTCTTAAAAGAATGTAATAGTTCTCAAACTCTTTTAGAAGTGGT
CATCTCTGAAGGCAGAAATCGCCAGATTCGTAGAGTTGCAGATAAATTGGGACATCGTGTACTTAAACTACACCGTACTG
CAATTGGTCAAATTAAGTTGCAGTTGCCTGGAGAGTCAGTTTTACCTATTGGCCATTATAGACAATTAAAGGATTTTGAA
ATTGAGTTTTTGGATGACCAAATTATTGAATCTAAATTCAGCTAA

Upstream 100 bases:

>100_bases
AATTGTGTAATTATTTCCAGAGATAAGAAATATATAAACTAGCAGATTTTAAATATTTAGGGTAGGAGAAAATATCCAAT
AAAGTGATGAAATAAATAAT

Downstream 100 bases:

>100_bases
AAACTCTTTTTTATGACAAACAAGTATGTTTTTTAAAGTCTGAACTAAGTGGCTCAAATAATTTAAATATCTAAATAATA
TTTCTAAATTATTTTATACT

Product: ribosomal large subunit pseudouridine synthase B

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDERLQKILSQWGIASRRQAEQMIIAGRVKVNGKIVQLGEKAQPDLDNIEVDGLPIRPEARPSPIYLLLNKPMGVISTCS
EPRKRSKVLDILNAELRNGKGIHPVGRLDADSTGALLLTNDGRVTYCLTHPKYCLSKTYQVLVEGHPQESILKLWRQGII
LSGKKTLPAEVKVLKECNSSQTLLEVVISEGRNRQIRRVADKLGHRVLKLHRTAIGQIKLQLPGESVLPIGHYRQLKDFE
IEFLDDQIIESKFS

Sequences:

>Translated_254_residues
MDERLQKILSQWGIASRRQAEQMIIAGRVKVNGKIVQLGEKAQPDLDNIEVDGLPIRPEARPSPIYLLLNKPMGVISTCS
EPRKRSKVLDILNAELRNGKGIHPVGRLDADSTGALLLTNDGRVTYCLTHPKYCLSKTYQVLVEGHPQESILKLWRQGII
LSGKKTLPAEVKVLKECNSSQTLLEVVISEGRNRQIRRVADKLGHRVLKLHRTAIGQIKLQLPGESVLPIGHYRQLKDFE
IEFLDDQIIESKFS
>Mature_254_residues
MDERLQKILSQWGIASRRQAEQMIIAGRVKVNGKIVQLGEKAQPDLDNIEVDGLPIRPEARPSPIYLLLNKPMGVISTCS
EPRKRSKVLDILNAELRNGKGIHPVGRLDADSTGALLLTNDGRVTYCLTHPKYCLSKTYQVLVEGHPQESILKLWRQGII
LSGKKTLPAEVKVLKECNSSQTLLEVVISEGRNRQIRRVADKLGHRVLKLHRTAIGQIKLQLPGESVLPIGHYRQLKDFE
IEFLDDQIIESKFS

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=238, Percent_Identity=33.1932773109244, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787524, Length=250, Percent_Identity=34.8, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788510, Length=241, Percent_Identity=33.6099585062241, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87081838, Length=196, Percent_Identity=31.1224489795918, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28560; Mature: 28560

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERLQKILSQWGIASRRQAEQMIIAGRVKVNGKIVQLGEKAQPDLDNIEVDGLPIRPEA
CCHHHHHHHHHCCCCHHHHHHHEEEEEEEEECCEEEEECCCCCCCCCCEEECCEECCCCC
RPSPIYLLLNKPMGVISTCSEPRKRSKVLDILNAELRNGKGIHPVGRLDADSTGALLLTN
CCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DGRVTYCLTHPKYCLSKTYQVLVEGHPQESILKLWRQGIILSGKKTLPAEVKVLKECNSS
CCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCH
QTLLEVVISEGRNRQIRRVADKLGHRVLKLHRTAIGQIKLQLPGESVLPIGHYRQLKDFE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHCCCCCC
IEFLDDQIIESKFS
EEHHHHHHHHHCCC
>Mature Secondary Structure
MDERLQKILSQWGIASRRQAEQMIIAGRVKVNGKIVQLGEKAQPDLDNIEVDGLPIRPEA
CCHHHHHHHHHCCCCHHHHHHHEEEEEEEEECCEEEEECCCCCCCCCCEEECCEECCCCC
RPSPIYLLLNKPMGVISTCSEPRKRSKVLDILNAELRNGKGIHPVGRLDADSTGALLLTN
CCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DGRVTYCLTHPKYCLSKTYQVLVEGHPQESILKLWRQGIILSGKKTLPAEVKVLKECNSS
CCEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCH
QTLLEVVISEGRNRQIRRVADKLGHRVLKLHRTAIGQIKLQLPGESVLPIGHYRQLKDFE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHCCCCCC
IEFLDDQIIESKFS
EEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]