| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is cdsA [H]
Identifier: 113475034
GI number: 113475034
Start: 1971541
End: 1972422
Strand: Direct
Name: cdsA [H]
Synonym: Tery_1291
Alternate gene names: 113475034
Gene position: 1971541-1972422 (Clockwise)
Preceding gene: 113475031
Following gene: 113475036
Centisome position: 25.44
GC content: 39.34
Gene sequence:
>882_bases ATGTCTTGGTCTCGAATAGTTAGTGGACTTGTAGCAATTGCGGTAGCTCTGGGAATGATTATCTTTGGGGGATGGTGGTT TACAGCAGGCATGGGAGTCATAGTTTACCTAGGCCAACTCGAATATTTTCAACTAGCTAGTACTAAAGGTATTGTACCAG CAGCCAAAACTACTCTAGGGCTAAGTCAAGTCATGTTAGTAGTAGCAGCTCTCAATCCTAATTTAGTAGATGCCATATTT ACATTAGCAGGAACTATAATCTGTTTTTATCTACTGTTTCAGCCAAAATTAGCAAGTATAGCTGACATAGCATCATCAAT TTTAGGTCTATTTTATGGTGGATATCTACCTAGCTATTGGATTAGACTCAGAGTTGGATTTGAAGCTCAATTACAGATAT CCCAAATAACTTTAGAAAACTACGAGTATACTTCATGGATAGACCCTTTGAGTTGGCCTTCGAGCTTAACATTTACTCTG CTTGGTTTTTGCTGTATATGGGCTGCTGATATAGGTGCTTATTTTGTCGGGAAGTTCTTTGGTCGAATTAGACTTTCAGA AATAAGCCCGAAAAAGACTGTGGAGGGTGCAGTATTTGGAGTTTTAGGTAGTGTAGGAGTAGCTACAATAGGTTCTTGGT ACTTAGATTGGCCTGGTTCCCCTTGGACAGGTGCTGTCTTAGGGTTAATAGTAGGTATTGCTAGCCTACTTGGAGACTTA ACGGAATCAATGATGAAACGAGATGCAGGTGTTAAAGATTCTGGACAACTCATACCTGGACATGGAGGAATTCTTGACCG CACTGACAGTTATGTTTTTACTGCACCCCTTATATATTATTTTTTCACCTTACTTTTACCAGCCCTCAAAAATTATAATT AG
Upstream 100 bases:
>100_bases ATATGTTTAAAAACAAAACAATTAATAAGTAGAAAGATCATGGGGGAGGCTTCAAACCAAATTTTTCGGTAAAATTAAAA TTTCTAAAGTTTATAATATT
Downstream 100 bases:
>100_bases GGCTGGCTGAATGAATAAATATAGAATCCTGATGATACATCACTGTTAGTGATGGCTTATCTTGAGAAAAGGACCAAAAA ATCACGAAATTAATATTTTT
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSWSRIVSGLVAIAVALGMIIFGGWWFTAGMGVIVYLGQLEYFQLASTKGIVPAAKTTLGLSQVMLVVAALNPNLVDAIF TLAGTIICFYLLFQPKLASIADIASSILGLFYGGYLPSYWIRLRVGFEAQLQISQITLENYEYTSWIDPLSWPSSLTFTL LGFCCIWAADIGAYFVGKFFGRIRLSEISPKKTVEGAVFGVLGSVGVATIGSWYLDWPGSPWTGAVLGLIVGIASLLGDL TESMMKRDAGVKDSGQLIPGHGGILDRTDSYVFTAPLIYYFFTLLLPALKNYN
Sequences:
>Translated_293_residues MSWSRIVSGLVAIAVALGMIIFGGWWFTAGMGVIVYLGQLEYFQLASTKGIVPAAKTTLGLSQVMLVVAALNPNLVDAIF TLAGTIICFYLLFQPKLASIADIASSILGLFYGGYLPSYWIRLRVGFEAQLQISQITLENYEYTSWIDPLSWPSSLTFTL LGFCCIWAADIGAYFVGKFFGRIRLSEISPKKTVEGAVFGVLGSVGVATIGSWYLDWPGSPWTGAVLGLIVGIASLLGDL TESMMKRDAGVKDSGQLIPGHGGILDRTDSYVFTAPLIYYFFTLLLPALKNYN >Mature_292_residues SWSRIVSGLVAIAVALGMIIFGGWWFTAGMGVIVYLGQLEYFQLASTKGIVPAAKTTLGLSQVMLVVAALNPNLVDAIFT LAGTIICFYLLFQPKLASIADIASSILGLFYGGYLPSYWIRLRVGFEAQLQISQITLENYEYTSWIDPLSWPSSLTFTLL GFCCIWAADIGAYFVGKFFGRIRLSEISPKKTVEGAVFGVLGSVGVATIGSWYLDWPGSPWTGAVLGLIVGIASLLGDLT ESMMKRDAGVKDSGQLIPGHGGILDRTDSYVFTAPLIYYFFTLLLPALKNYN
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=131, Percent_Identity=45.8015267175573, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787677, Length=115, Percent_Identity=44.3478260869565, Blast_Score=95, Evalue=6e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 31782; Mature: 31650
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWSRIVSGLVAIAVALGMIIFGGWWFTAGMGVIVYLGQLEYFQLASTKGIVPAAKTTLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHH LSQVMLVVAALNPNLVDAIFTLAGTIICFYLLFQPKLASIADIASSILGLFYGGYLPSYW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IRLRVGFEAQLQISQITLENYEYTSWIDPLSWPSSLTFTLLGFCCIWAADIGAYFVGKFF EEEEECCCCEEEEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GRIRLSEISPKKTVEGAVFGVLGSVGVATIGSWYLDWPGSPWTGAVLGLIVGIASLLGDL HHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH TESMMKRDAGVKDSGQLIPGHGGILDRTDSYVFTAPLIYYFFTLLLPALKNYN HHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SWSRIVSGLVAIAVALGMIIFGGWWFTAGMGVIVYLGQLEYFQLASTKGIVPAAKTTLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHH LSQVMLVVAALNPNLVDAIFTLAGTIICFYLLFQPKLASIADIASSILGLFYGGYLPSYW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IRLRVGFEAQLQISQITLENYEYTSWIDPLSWPSSLTFTLLGFCCIWAADIGAYFVGKFF EEEEECCCCEEEEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GRIRLSEISPKKTVEGAVFGVLGSVGVATIGSWYLDWPGSPWTGAVLGLIVGIASLLGDL HHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH TESMMKRDAGVKDSGQLIPGHGGILDRTDSYVFTAPLIYYFFTLLLPALKNYN HHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]